BAC Information

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BAC

Clone NameMSMg01-295M09
Chromosome1 (Build37)
Map Location 83,271,461 - 83,271,769
singlet/doubletsinglet
Overlap gene4930544G21Rik
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
Downstream geneEG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M09.T7 (MSMg01no295_m09.b1)MSMg01-295M09.TJ (MSMg01no295_m09.g1)
ACCAG423573AG423574
length790755
length of high quality
(start - end)
314 (50 - 363)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no295_m09.b1 PHD_FILE: MSMg01no295_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:48 2005CHROMAT_FILE: MSMg01no295_m09.g1 PHD_FILE: MSMg01no295_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAATAGTTACATATCCTATTTCAGTATTGCCCCATTACCT
AAAATGCTGAAGAATGTTCAAATGAATATTCTCAGTTAATTACAAAATAG
CCCAAAAGAAATTTTTTCCAGCTAAAAGCAAGGTATACCAGCACTTTATC
AGGCTCTGACTGGTTTTATAGTAATCAGACATGAAACATAGCTAAGCAAC
AACTATAGGGGCCAGGAGGTGACTTGATCCTTTTGGATGTGGGGATGAAT
TCACTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTATTATTATTTTTTATTTAACCCCCCCCCCCCCCCTTAATTTATCATTT
TCGACCCAACTTCATACTTCCCCCCCCCAAAAAAAAAAAACACTCTTTGT
GGGGGAGGCACCTTTTGTTCCCGCTTGTCGATTGTTTCAATACCTGCTTT
CCCCCCCCCCTTCTTCCCTTCACATAAGGGTGGTGTATTCCCTTTGTTCT
ACTACCCCAGTATAGCGGTTAGCATTTGGTCCCTCTAAATACCACTCTAT
TTTTTTTTTTCACCCCTCTACTCTCCCCATATATTTTACTTCCCGTATTT
CTCTTTTTATTTCTGTCCCCCAAATACTTTATCTCTCTTTTTTTTTTTAT
CCACTCTTTTGTCTAATATATCCTCTCTTTCGTTTATACATACACTACCC
ATATTTCCTCCCCCCCCCCTCATTTCCTCCTCACTATTTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGC
TGAGAAGCACCTGAAAAAACGTTCAACATCCTTAATCATCGGGGAAACGC
AAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAG
ATAAAAAATTCAGGTGTCAGCAGATGCTGGAGAGGATGTGGAGAAAGACG
AACAGTCCTCCATTGTTGTGGGATTGCAAGCTTGTATAACCACTCTGGAA
ATCAATCTGGTGGTTCCTCAGAAAATTGGACATAGTAGTACTGGAGGATC
CCGCAATACCTCTCTTGGGCATCTCCCCCGCACGATGTTCCAACCGGTAA
GAAGGATACATGCTCCACCACGTTCATAAAAGACTTATTTATAATAGGCG
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGACACAGAAA
ATTTCGTATATTTACACAATGGAGTGCTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGTATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCACAAAAGAACTCATATGATATGTACTCACTGTAA
GCGGATATTAGCTCAGAAACTTATATTACCCAAGATATATGATACTATCT
GCATAACACCTGATATTCTTGAAGAACCTAGACCATAGTGTGCACTATTT
GCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m09.b1 MSMg01no295_m09.b1 CHROMAT_FILE:
MSMg01no295_m09.b1 PHD_FILE: MSMg01no295_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:48 2005
         (314 letters)



>mm_chr1_83271257_83271970
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatagttacatatcctatttcagtattgccccattacctaaaatgctgaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatagttacatatcctatttcagtattgccccattacctaaaatgctgaaga 264

                                                                       
Query: 65  atgttcaaatgaatattctcagttaattacaaaatagcccaaaagaaattttttccagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttcaaatgaatattctcagttaattacaaaatagcccaaaagaaattttttccagct 324

                                                                       
Query: 125 aaaagcaaggtataccagcactttatcaggctctgactggttttatagtaatcagacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaagcaaggtataccagcactttatcaggctctgactggttttatagtaatcagacatg 384

                                                                       
Query: 185 aaacatagctaagcaacaactataggggccaggaggtgacttgatccttttggatgtggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacatagctaagcaacaactataggggccaggaggtgacttgatccttttggatgtggg 444

                                                                       
Query: 245 gatgaattcactttattattattattattattattattattattattattattattatta 304
           ||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 445 gatgaattcacattattattattattattattattattattactattattactattatta 504

                    
Query: 305 ttattattt 313
           |||||||||
Sbjct: 505 ttattattt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)