Query= MSMg01no295_m10.b1 MSMg01no295_m10.b1 CHROMAT_FILE:
MSMg01no295_m10.b1 PHD_FILE: MSMg01no295_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:48 2005
(313 letters)
>mm_chr1_189877340_189878052
Length = 713
Score = 526 bits (272), Expect = e-154
Identities = 302/314 (96%), Gaps = 4/314 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcccctcctaaatgtgagatcttgagttttatcctgagcacagtcagtcaata 63
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattctttcctcctaaatgtgagatcttgagttttatcctgagcacagtcagtcaata 259
Query: 64 ggtcaatctattgaccaatcaatcagact----aatcaatcaatcaatcaatcaatcagt 119
|||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct: 260 ggtcaatcaattgaccaatcaatcacactaatcaatcaatcaatcaatcaatcaatcaat 319
Query: 120 tggaaacagatacattttggggcatagggagggttgttctccttccttggtaaagcctag 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 tggaaacagatacattttggagcatagggagggttgttctccttccttggtagagcctag 379
Query: 180 agtcacagaaaagccttctgatttattacttaataaacctaaatagcttcttaggactta 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtcacagaaaagtcttctgatttattacttaataaacctaaatagcttcttaggactta 439
Query: 240 aaggttatcagtcactttcttgtgaactgaattaatccattttcagtcattatgatggga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaggttatcagtcactttcttgtgaactgaattaatccattttcagtcattatgatggga 499
Query: 300 tacctaaagttctg 313
||||||||||||||
Sbjct: 500 tacctaaagttctg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_m10.g1 MSMg01no295_m10.g1 CHROMAT_FILE:
MSMg01no295_m10.g1 PHD_FILE: MSMg01no295_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:48 2005
(281 letters)
>mm_chr1_190055010_190055688
Length = 679
Score = 487 bits (252), Expect = e-142
Identities = 275/286 (96%), Gaps = 7/286 (2%)
Strand = Plus / Minus
Query: 1 agtggggagggtatgggttgggctgccctcactttccactcagtccctataaggaattgg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agtggggagggtatgggttggactgccctcactttccactcagtccctataaggaattgg 288
Query: 61 gcagactctgtccatttctttaggtctccattgcccatgactgagaaaaacagccttttt 120
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 287 gcagactc--tccatttctttaggtctccattgcccatgactgagaaaaagagccttttt 230
Query: 121 atttagactaaaaggggaaatggtgggctttgtcctgatgctgtttgtattctgatgtca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 229 atttagactaaaaggggaaatggtgggctttgtcctgatgctgtttgtattctgctgtca 170
Query: 181 attctgcttcctcaagaggggttgtcccaactagaagtcaaccatgtactcaggtgatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 attctgcttcctcaagaggggttgtcccaactagaagtcaaccatgtactcaggtgatct 110
Query: 241 catgtgtac-----cttctcatctttttaactggtcaacaaaggct 281
|||||| || ||||||||||||||||||||||||||||||||
Sbjct: 109 catgtgaacattctcttctcatctttttaactggtcaacaaaggct 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 679
Length adjustment: 9
Effective length of query: 272
Effective length of database: 670
Effective search space: 182240
Effective search space used: 182240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
