BAC Information

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BAC

Clone NameMSMg01-295M15
Chromosome1 (Build37)
Map Location 87,483,190 - 87,483,426
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M15.T7 (MSMg01no295_m15.b1)MSMg01-295M15.TJ (MSMg01no295_m15.g1)
ACCAG423584AG423585
length755757
length of high quality
(start - end)
239 (126 - 364)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no295_m15.b1 PHD_FILE: MSMg01no295_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:49 2005CHROMAT_FILE: MSMg01no295_m15.g1 PHD_FILE: MSMg01no295_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGAATCCCTTCTTGGGAAATTAAGCTAGGGAACAGATAATGG
TAGAGCCTAAGGATGACTTCTCGGGCATGAGAAACCAAGAATTTGTGAAG
GGAAAACAAGAACCAGACATGAGGAGATAAAGACTTGAGCAGCTGGAGTA
TTGGATCGTTTGCCTGCTATCCCAGCACTTGAAAGCATCCAGGACCATGG
AAAGAACTGAGGTGGGAGAAAACGGACTTGGAAGGCTTCCAGGAAGCAAT
GGGGAAACCAATGGATGACAGTATCAGAAAGGTCACAGTGTTTTTATCAT
TATTATCATTATTTTATTTATGACCCCCCTCAGTATGTGGAGGTTGGGCA
TATGTTCCATGGTACACATGGAGAGGACAAGAAACAACTTGTGAGTTGGG
TCTGTTCTTCCACCATATGGGTTTCAGGGATCAAATTCAGTTCACCAGGC
TTGGTGGCAAGGACCTTGATCTTGTGAGCCACTTGCCAGACCAATGACAC
ATTTTAATTGACTGGTGACATCTCAGAGTAGAAGATGGGAGAGCGCCAAA
GGCGAGGTGGGAATAGGTAGTCAGGTGGACATCCAACCTGCTTGCCACCA
TGAGGTTTAAGTGACAGATAATGGATGTTGCCTGCCTATGATTTACCAGG
AAGCATTTTCCTTCTGGCGGAGGTTAGTGTACCAGTCACTCCACGCAGTT
GTGTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCGGTTGCATGTGGAGGGGGAG
AAGGACCTGGGAAGGAAAGTGGTCCAGCAGTCAGCTGATACAGCAAACCA
CCAAGACTGATGCAGAAGTACCAGCTTCTGCTGAAGGCAGAAATGGCCCT
GGGCACAGAACGGTTGGCCTTGTCACCTTGGCTACTTCCCTTCTCCAACT
CACTCACCCAGCCCAGTCCTCAAGCATGTCTCATGGCTGTCCCTCAGATG
GCCACACGAAGGTAGGAATTCCTTCTGAACAGGTGTCCTAGTGCAACTCT
CTAAACATACTTTTTCTAGTCTATACACCCACTAAAGCCCTAGAATGCTG
CCCAAGACTGTAGAGCACTTACCTACCACTAAAGAGCACTGTGGGTCCCT
CTTGACACTGGAAGCTAAAAGGAACTAGTGAGGCCTTTTAAGGGAACAGG
AATCCTCTCGATGGCTGTCATCAAACACAAGTAACATGAGAGTCAAGCAA
GAACAGAAGTAAGTCTATCAGAGAACTAAGAGTGGCAAAGAACAACAAGC
CAAACGCTCTTGCTTAGGCACGTGTGTTGGAGGGCTCTTTATGCAGGCAA
AAGGTCTCTTTTAGCTGTTGGCCACACGTTTCAAGCCTCCCAGCCAGCGT
AATGAAGTGGCTGAGATGTGCTCTGTGTTGTGAGCTGGAAGAGACCTGTG
TGGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m15.b1 MSMg01no295_m15.b1 CHROMAT_FILE:
MSMg01no295_m15.b1 PHD_FILE: MSMg01no295_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:49 2005
         (239 letters)



>mm_chr1_87482990_87483628
          Length = 639

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagact 260

                                                                       
Query: 61  tgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggac 320

                                                                       
Query: 121 catggaaagaactgaggtgggagaaaacggacttggaaggcttccaggaagcaatgggga 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggaaagaaccgaggtgggagaaaacggacttggaaggcttccaggaagcaatgggga 380

                                                                    
Query: 181 aaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatcattat 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatcattat 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)