BAC Information

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BAC

Clone NameMSMg01-295M19
Chromosome1 (Build37)
Map Location 107,109,904 - 107,110,140
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546, LOC100041134, Cdh20
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M19.T7 (MSMg01no295_m19.b1)MSMg01-295M19.TJ (MSMg01no295_m19.g1)
ACCAG423591AG423592
length765772
length of high quality
(start - end)
239 (124 - 362)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no295_m19.b1 PHD_FILE: MSMg01no295_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:50 2005CHROMAT_FILE: MSMg01no295_m19.g1 PHD_FILE: MSMg01no295_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCCATTGACTCTACCAAGACTCAATAGAGAGCGACCATTTCTCTTT
CTTGACCAGAAATGATATGAACGGAAACTAAAACCTATGGTCTGCAGCAA
TCCTGTTGTAGGCGACCAGCAGTCTAAAGTTAGGTTTTGTCACTCTATAT
CGTTAATTTTAGAAACAGCTAATCTCTTAGGACCCCTCAGCCAGGACAGG
GAATGAAGAAGGCAGCAAACTACCTCAGTTATAGTGCATACAGCTGCATG
CTTCCTTCTTAGTCTTCCCTACTAAATAATGCCTGATAAATTATATAATT
TCTGAAAAGTTTTTTAAGACACCCCCACAAAGATCTTGTTTAAATGAATT
ATAACTCAATCACCCACTTTAAATGGACCATATCTTTCCAGTGTCTGCCT
TGCTTCTCCCTGGGCATGTTTCCTTGAAGAGTTATGTGAAGCCTTTAATG
GCACAACAGTATAAAAAGGACACTTCAATAAACTCTAGAATCGTTTATTT
ATGTAGTCAGTCAACAAACATTTACTGAATCTCACTTAGATGCAGCCACT
ATGTTAGGGGATGGCTGTTAGGCTGTCTAGCGATTCCCAGGCTCATAGGT
CCCTGTAGTAGTGTTTCAGCACTAAAAGTCACATTCACCCGCAACATAGG
GAAGCAGGTGTCGCTGTTGGTGCTAGCCGTGTTACGCGACAGTTAACGCT
GTGTGAGATTTTTGT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATGTGTGCCAGCTTTTGTTATACAA
ACCTTGCTCCTAAATTGAAAACTATTGGGTTAATAAAGATGCCTACAACC
TATATCTGGGCAGAAGAGAGGTAGACAGGGCTTTGATTCCTGGACTTGTC
GTCTGCAGCAGAGACCACAATGAGAAAGAGGAAGAAGAAAAAAGGTCATT
GGGTAGGTAGAAAGCACATGGCCATTGGTGGCAACCAGTGGGAGTAAGAG
AAGCCCAGGTGGAATATGGCAAGTGATATCTTGGGGTTATTGACAGTAAA
ATATACAAAATATTTTTTAGAGCCGACCCCTGCCCAGCTCTAATACTTTA
AGCTTATTATAAACACACCCGCTTTTATATATAATATTTGTGAGCTCAAT
GATTAAAGGTGGGGTAGAAACCCTCAAATAATACTTACCTCAAGAGAATT
TTCAAGCCATGGACATACATCCTTTAGTGTTCTGTTGTGAGACACTGTTT
ATATAAATGGAATTATTATATTTGACCATGTTCTAAAAGTTTGATCAGCA
CTGTATTCAGTTGCTTGGTTATACCTCCATATGGCAGGTGAAAATTCTTC
TCCCACGCGATAAAGAATGGTAAAGTCAATCTGTAACCATTCTGAACTAC
CACATCCATAACAGATGAAATCACAGGAGTCATTCCATTTGCTCACAGAT
GGTCCTCTGCTCCTCTACCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m19.b1 MSMg01no295_m19.b1 CHROMAT_FILE:
MSMg01no295_m19.b1 PHD_FILE: MSMg01no295_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:50 2005
         (239 letters)



>mm_chr1_107109704_107110342
          Length = 639

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaactaaaacctatggtctgcagcaatcctgttgtaggcgaccagcagtctaaagttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaaactaaaacctatggtctgcagcaatcctgttgtaggcgaccagcagtctaaagttag 378

                                                                       
Query: 61  gttttgtcactctatatcgttaattttagaaacagctaatctcttaggacccctcagcca 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttttgtcgctctatatcgttaattttagaaacagctaatctcttaggacccctcagcca 318

                                                                       
Query: 121 ggacagggaatgaagaaggcagcaaactacctcagttatagtgcatacagctgcatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggacagggaatgaagaaggcagcaaactacctcagttatagtgcatacagctgcatgctt 258

                                                                    
Query: 181 ccttcttagtcttccctactaaataatgcctgataaattatataatttctgaaaagt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccttcttagtcttccctactaaataatgcctgataaattatataatttctgaaaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)