BAC Information

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BAC

Clone NameMSMg01-296D04
Chromosome1 (Build37)
Map Location 181,150,082 - 181,150,318
singlet/doubletsinglet
Overlap geneSmyd3
Upstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296D04.T7 (MSMg01no296_d04.b1)MSMg01-296D04.TJ (MSMg01no296_d04.g1)
ACCAG423878AG423879
length767744
length of high quality
(start - end)
239 (127 - 365)237 (127 - 363)
definitionCHROMAT_FILE: MSMg01no296_d04.b1 PHD_FILE: MSMg01no296_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:20 2005CHROMAT_FILE: MSMg01no296_d04.g1 PHD_FILE: MSMg01no296_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGGTTTGTTCTTTGACGGTGACAGACTTAAAGCCTTGTTT
ATATTAGAGGGGCTAAATATGCCCATGGTGCAAAAATTGAGAAGGGACAT
AATGGAGAAACAGTTTGTGTGACATGTTCCCGTCAACTTATCTGTGCTCA
CTGTGCAGTGTATTATGGACTGATATGTGGACCTGGTGCATACACTATGA
CTGTCCTAAAGCTCCTGCCACGTGCCAACACACCTGGTGGCAGCTGCTGC
TGCTGCTCCTGCTCCTTTCCTACTCCTCCTCCTCCGCCCCTTCTCCTCCT
TCTTCATTCTTTCTTTATACTGTTCACCTCCCAAAAGCTCAAAAAGCAAA
TATAACATAATTTGAGAATCCCAATGAAACAGAATATCAATTTAATATAA
TTAATTAACAAACTATATTAAATGTACAATCAAATGTATGTATATGTGTG
TTTGTATGTATGTAGGTTATGTGTGTGTGTACATGTACTATTGCACGTAT
TTTCCTCATTATCTTCCTTCCCCTTTTAATGTAAATTTACTCCCCTCTAC
TGTCATCCCCCTCACTTCACTTGTTTTCTAGTACTCTTTGCAATGTCCTC
AAATTCACACTCATTTTGCTTTGTTTTGCTCCATTTATTTTCGTTATTGT
TCTCTTCATTTTTTTTTTTTGCCCGTTTCGTTTTCCCCTACCTTTTGTTT
ATATTTCTTTTTTTTTG
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGAGAGAGTGACCTGGGGGAAGAG
TCACTGGGGAAGATGTGAGGAGCCACTGACACTCAGTGCCTGAGCAGAGG
TAACCAGCCACGTGGCAAAATGTAGATTAGTATAAATGGGTTATTTTAAA
TTGTTAGTTAGTCAGGGAACAAGCCCAGCTATATGTCCCAGGTATTTGTA
CATATATTTTGAGTCCGAGTCAGTAGAGCGGGAACTTGGGGCCAGAAGGA
AATCAGCTCGTAACATGATTATTTTTTCAATAGCATTATGGCAAGCTACA
TTTTCCAAGCTGTAGCTTAGTTTCNTTTGCCAGNCCCGGNGGNAGTGGTA
GCTGAGATAACATCTGACCCACGTCCAAGAAATTCAAATGAAGCACTGCT
CTAGTAAAGCTGATAGAAGCATCTTGCTGAAGGCAGGAACCCACTCAAGC
ACAAGGTCTGAAATCCCAGGCACTCTGTCAGCGTGTCACTTTCTCCTAGT
CATACATTTTCCCCTGTCCCATTGGTTCTGTTACTCTTCAGAACCCTGAT
TAACACAATTCGGTACCAGAATATGGGCTCTTGCTGGTTGTGACCGATCT
GACTATGCTGCTTTGGCCACGATTGTGGAATTATTTGGAAACTTGGCCAA
CAAAGACTCTGACGCCTTCAAGCTCAAAGTGCTGTTTTTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_d04.b1 MSMg01no296_d04.b1 CHROMAT_FILE:
MSMg01no296_d04.b1 PHD_FILE: MSMg01no296_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:20 2005
         (239 letters)



>mm_chr1_181149940_181150578
          Length = 639

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgcaaaaattgagaagggacataatggagaaacagtttgtgtgacatgttcccgtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtgcaaaaattgagaagggacataatggagaaacagtttgtgtgacatgttcccgtcaa 320

                                                                       
Query: 61  cttatctgtgctcactgtgcagtgtattatggactgatatgtggacctggtgcatacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttatctgtgctcactgtgcagtgtattatggactgatatgtggacctggtgcatacact 260

                                                                       
Query: 121 atgactgtcctaaagctcctgccacgtgccaacacacctggtggcagctgctgctgctgc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 259 atgactgtcctaaagctcctgccacttgccaacacacctggtggcagctgctgctgctgc 200

                                                                    
Query: 181 tcctgctcctttcctactcctcctcctccgccccttctcctccttcttcattctttc 237
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcctgctcctttcctgctcctcctcctccgccccttctcctccttcttcattctttc 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)