Query= MSMg01no297_d13.b1 MSMg01no297_d13.b1 CHROMAT_FILE:
MSMg01no297_d13.b1 PHD_FILE: MSMg01no297_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:37 2005
(683 letters)
>mm_chr1_107441244_107442326
Length = 1083
Score = 1282 bits (663), Expect = 0.0
Identities = 678/683 (99%), Gaps = 2/683 (0%)
Strand = Plus / Plus
Query: 1 aaattaacttgctcagatcatgttttagataaacagcatgttacaatgttccttaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattaacttgctcagatcatgttttagataaacagcatgttacaatgttccttaaagct 260
Query: 61 tctaaaaatcagataatatgaagatataccttcatgtagtaatactgggtagataaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaaaatcagataatatgaagatataccttcatgtagtaatactgggtagataaattg 320
Query: 121 atgatttcataataatttctgataatgattttatagagcccctaaattaatacaagtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatttcataataatttctgataatgattttatagagcccctaaattaatacaagtaat 380
Query: 181 atcaatctccctatggaataaaagctgcaaatacagttctgtaaacattcatttgtcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaatctccctatggaataaaagctgcaaatacagttctgtaaacattcatttgtcatg 440
Query: 241 ggctaattgcacttgtaaaagaaaacaggcttgaaacaaatttatgatgaaggaaaacat 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctaattgcacttggaaaagaaaacaggcttgaaacaaatttatgatgaaggaaaacat 500
Query: 301 tccttctatgttaggaatgaggccagtatctggtaactaaagatcatcagctaggaatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttctatgttaggaatgaggccagtatctggtaactaaagatcatcagctaggaatgg 560
Query: 361 gcaatttattgtaggtgcaagaacagaaaatagggctggagagatggctaagtagttaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatttattgtaggtgcaagaacagaaaatagggctggagagatggctaagtagttaag 620
Query: 421 actgctcttctgaagatcccgagttcaaatcccagaaaccacaatgtggctaacaaccat 480
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 actgctcttctgaagatcctgagttcaaatcccagaaaccacattgtggctaacaaccat 680
Query: 481 ccataatgagatctgatgccctcttctggtgtgtctaacgatagctacagtgtacttaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccataatgagatctgatgccctcttctggtgtgtctaacgatagctacagtgtacttaca 740
Query: 541 tataataataaataagtctttttaaaaaaggccgggcagtggtgacgcatgcctttaatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataataataaataagtctttttaaaaaaggccgggcagtggtgacgcatgcctttaatc 800
Query: 601 ccagcacttgggaggcagaggcaggcggatttctgaagttca-ggacagtctggtctaca 659
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 801 ccagcacttgggaggcagaggcaggcggatttctga-gttcaaggacagtctggtctaca 859
Query: 660 aagtgagttccagggttatacag 682
|||||||||||||||||||||||
Sbjct: 860 aagtgagttccagggttatacag 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_d13.g1 MSMg01no297_d13.g1 CHROMAT_FILE:
MSMg01no297_d13.g1 PHD_FILE: MSMg01no297_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:37 2005
(671 letters)
>mm_chr1_107611387_107612457
Length = 1071
Score = 1259 bits (651), Expect = 0.0
Identities = 666/671 (99%)
Strand = Plus / Minus
Query: 1 caggacagctagggtctccgagaaaacctgcctcaacaaacaaacaaacaaaccaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 705 caggacagctagggtctccgagaaaacctgcctcaacaaacaaaccaaccaaccaaccaa 646
Query: 61 ccaacccaacccatccaaccaatcaaccttccagctggcttctttgcagaaatgagaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccaacccaacccatccaaccaatcaaccttccagctggcttctttgcagaaatgagaagc 586
Query: 121 agatcttaaaattcacatggagatttaagagacctacaatagctacagcaaacctaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agatcttaaaattcacatggagatttaagagacctacaatagctacagcaaacctaggag 526
Query: 181 cacagttgtgttgggagtaataaaaggcttcaagtttcaaactgaatgcagaaatgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacagttgtgttgggagtaataaaaggcttcaagtttcaaactgaatgcagaaatgaatg 466
Query: 241 taaatactctatgaacacaccaaaaccatttagtaattacactctaggtggcactggatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taaatactctatgaacacaccaaaaccatttagtaattacactctaggtggcactggatt 406
Query: 301 taacaaaactctcttttggaatgcttttgagaaagtagcccaggcttcctttcaattcac 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 taacaaaactctcttctggaatgcttttgagaaagtagcccaggcttcctttcaattcac 346
Query: 361 tactgtaatactggttggcctagaactcacaccatcttttgatagtgagcttcactagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tactgtaatactggttggcctagaactcacaccatcttttgatagtgagcttcactagta 286
Query: 421 ctgagattatagacatgtaccaccatgactggtgtaattaaaaaaatttttttagggttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctgagattatagacatgtaccaccatgactggtgtaattaaaaaaatttttttagggttt 226
Query: 481 ttgagacagggtctagccttgacttctcctgtctctatctcctaagtgctgggattatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttgagacagggtctagccttgacttctcctgtctctatctcctaagtgctgggattatat 166
Query: 541 gggtttaccaccatgctcagtttgataaatgcaagttaaaaagggaaaatggaaaaacta 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 165 gggtttaccaccatgctcagtttgataaatgcaagttataaagggaaaatggaaaaacta 106
Query: 601 taaaacatttatatgcacacatgaataattgcacagatttatcaactcaaggtttcatgg 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 105 taaaacatttatatgcacacgtgaataattgcacagatttatcaactcaaggtttcatgg 46
Query: 661 tgcatcgaagt 671
|||||||||||
Sbjct: 45 tgcatcgaagt 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
