TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGAGCGCGGA
ATTCTATCAAATTCTCCCAAATTTCATTACAGGAAAATATAGAGAACACA
AATGTTGAGCAAGATTCCAAAAACGCATTAGGGGCACAATGAGTTACATC
CTTCCCACCCACCTTCTGGGGAGCAGGGACCTTTCTGTAGCTTATATGTA
AACTATGAAAATATCATCTTTCTCCATCTGAGACTAGAAGTATAGCTTTT
ATCCATAAATGTAGTTTATGAGCTCATCCCTGTTTTCAAATTAATGGACA
AATATCCAAGCAGGCCCATTGCTGGAGGAGATGGACACCTGATACCCCAG
GTTGGATTAAGCAGAGAGTGAGCTAACCTTGTGCTTAGGGCATCACAAAG
GTCCCACACAACATGAGAAGTTGCTGAGAGGAAAAGCAGATTGTAATAAA
CATTACATTTGTTTTATAATTCTGAGTTTAAAGACCTTTGCATGCACATG
CAGGCGTGCATGTGTGCACTTGTACACACACACAAACACAAACACACACA
CACACACACACACACGACCATCATCATCTTCGCAGTGGTTCAAACTCCTG
CAGGTTGTCTTAGAACAGGTCAAGGTGGCACCCTTGTAAAGCGACCAACT
ATTCCTGACAAATTGTTTTTGATTTAGTTCATATAACGGTTCCATTTTCT
GAGTAGTGGTCCTCACGTGAGTCAGTGCTCAGCACTACGTTGCAGAAN

CACTACTCCGTTATTGCTGTAGGCCGGCTGCTCTCCATAATTAAGGTGAC
CTAATTATGAATTCCCTTAAGTCTTTCGTGTGTAATTAATGTGCCACAGA
TTCCAAGCATCCTGCTGACTGTGTGGACCGTGTACATATAGGATACACGG
TTTAAAAAGCCGCTGACTATCTCTGTGAAAGATCGAATCCTTGGTGCAAT
GGCCTTCATTCTTTTACTTGGCCTATCATAGCATAACCGTGGTTGTATCT
TCATCCATGAATGCCATTTTCTCTGCTCCCATGTTTTTCAGAAAATACCT
CGTATTTAAGACTAAAGGACTTATTCCACTGGACCTTCCTGCTAATGAGC
ATTGTGAACTTCATGTGTGTTCTGCCTCCTCCAATGTGCCCTTTTCCCAA
TTCCACACTGCGACTCTTCCATGACATGCCATGGATGCTCCTGTCCTTAC
GCATATGCTTCAGTGAATCCCTGATGCCTGAAAGAATCTACTGTACCGTT
TCCTTTTGAGACCCCATATTCTTGAAAATCTCTTATTCCCTAGAACCCTG
GCCTGATTGCCTTGCTTCGTTTGGTAGCTAGGATGACTAGTGCTCCCATG
AACTGCAATGATGATGAGCTCTTGCTGACCAGAGGGACTATTTCTCCTGA
GGACGCTAAAGTTGCACTGCCATCACAGAGGGCTTACGCGCCAGGAACTT
ATACCAGGTCTCAGGCTGGAGACATGACCAATATGCAT

Query= MSMg01no297_f22.b1 MSMg01no297_f22.b1 CHROMAT_FILE:
MSMg01no297_f22.b1 PHD_FILE: MSMg01no297_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:48 2005
         (701 letters)



>mm_chr1_52379219_52380319
          Length = 1101

 Score = 1201 bits (621), Expect = 0.0
 Identities = 666/689 (96%), Gaps = 14/689 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctatcaaattctcccaaatttcattacaggaaaatatagagaacacaaatgttga 63
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattctatcaaatgctttcaaatttcattacaggaaaatatagagaacacaaatgttga 619

                                                                       
Query: 64  gcaagattccaaaaacgcattaggggcacaatgagttacatccttcccacccaccttctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcaagattccaaaaacgcattaggggcacaatgagttacatccttcccacccaccttctg 559

                                                                       
Query: 124 gggagcagggacctttctgtagcttatatgtaaactatgaaaatatcatctttctccatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gggagcagggacctttctgtagcttatatgtaaactatgaaaatatcatctttctccatc 499

                                                                       
Query: 184 tgagactagaagtatagcttttatccataaatgtagtttatgagctcatccctgttttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgagactagaagtatagcttttatccataaatgtagtttatgagctcatccctgttttca 439

                                                                       
Query: 244 aattaatggacaaatatccaagcaggcccattgctggaggagatggacacctgatacccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 aattaatggacaaatatccaagcaggcccattgctggaggagatggacaactgatacccc 379

                                                                       
Query: 304 aggttggattaagcagagagtgagctaaccttgtgcttagggcatcacaaaggtcccaca 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aggctggattaagcagagagtgagctaaccttgtgcttagggcatcacaaaggtcccaca 319

                                                                       
Query: 364 caacatgagaagttgctgagaggaaaagcagattgtaataaacattacatttgttttata 423
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caacatgagaagttgctgggaggaaaagcagattgtaataaacattacatttgttttata 259

                                                                       
Query: 424 attctgagtttaaagacctttgcatgcacatgcaggcgtgcatgtgtgcacttgtacaca 483
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attctgagtttaaagatctttgcatgcacatgcaggcgtgcatgtgtgcacttgtacaca 199

                                                                       
Query: 484 cacacaaacacaaacacacacacacacacacacacacgaccatcatcatcttcgcagtgg 543
           ||||||||||||  ||||||||||||            ||||||||||||||||||||||
Sbjct: 198 cacacaaacaca--cacacacacaca------------accatcatcatcttcgcagtgg 153

                                                                       
Query: 544 ttcaaactcctgcaggttgtcttagaacaggtcaaggtggcacccttgtaaagcgaccaa 603
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ttcaaactcctgcaagctgtcttagaacaggtcaaggtggcacccttgtaaagcgaccaa 93

                                                                       
Query: 604 ctattcctgacaaattgtttttgatttagttcatataacggttccattttctgagtagtg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctattcctgacaaattgtttttgatttagttcatataacggttccattttctgagtagtg 33

                                        
Query: 664 gtcctcacgtgagtcagtgctcagcacta 692
           |||||||||||||||||||||||||||||
Sbjct: 32  gtcctcacgtgagtcagtgctcagcacta 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)