Query= MSMg01no298_b05.b1 MSMg01no298_b05.b1 CHROMAT_FILE:
MSMg01no298_b05.b1 PHD_FILE: MSMg01no298_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:40 2005
(677 letters)
>mm_chr1_133109296_133110372
Length = 1077
Score = 1234 bits (638), Expect = 0.0
Identities = 665/674 (98%)
Strand = Plus / Minus
Query: 4 ggaattcctcagctgactgggaagaaaaccagctgcctcagggccccaagatagagtatg 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggaattcctcagctgagtgagaagaaaaccagctgcctcagggccccaagatagagtatg 818
Query: 64 ctgcctggcagcttgcagaaaaggagaccaaatgtgccaaatttgaaatttggtagctag 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 817 ctgcctggcagcttgcagaaaaggagaccaaatgtgccaaatttgaaatttggtagatag 758
Query: 124 aagggattctcggggtgcctgaaccatcatcagccaagaataaccttccttcttccagat 183
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 757 aagggattctcggggtgcctgaaccatcatcagccaagagtaaccctccttcttccagac 698
Query: 184 catccgtgcaagcccaggctttgaggtccctgcccccaaacccacgtgctctggtttacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 catccgtgcaagcccaggctttgaggtccctgcccccaaacccacgtgctctggtttacc 638
Query: 244 tcaggcccctggcttcacagtcaggagagccagtatgtggagagctttgccctgactgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcaggcccctggcttcacagtcaggagagccagtatgtggagagctttgccctgactgag 578
Query: 304 ctgtggcaccttcaggacaagggaccacagctggcccggcagccatctgtgggaaccctg 363
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 577 ctgtggcaccttcaggacaagggaccacagctggcccggcagccatctatgcgaaccctg 518
Query: 364 tcttctgccagccccaccctcctgtccttttctcctgcctctggctgagtctctctgctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcttctgccagccccaccctcctgtccttttctcctgcctctggctgagtctctctgctt 458
Query: 424 cctggccccttggaccgcccttcccttttgccaaggaggctctagaggaaggtcctggga 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 457 cctggccccttggaccgcccttgccttttgccaaggaggctctagaggaaggtcctggga 398
Query: 484 aacaggaaacagcagcgtatgctctgccacttgtggtatgtgccactgcgggccttcctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aacaggaaacagcagcgtatgctctgccacttgtggtatgtgccactgcgggccttcctt 338
Query: 544 tccatctctgaggaagtccctggatgaaagtctaaaggttcttttcaattctggacatta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tccatctctgaggaagtccctggatgaaagtctaaaggttcttttcaattctggacatta 278
Query: 604 agtctctacttccatggatgagaacaccacctctggaaatttgtgcctttcccccagttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtctctacttccatggatgagaacaccacctctggaaatttgtgcctttcccccagttt 218
Query: 664 ggggtatcgtcagt 677
||||||||||||||
Sbjct: 217 ggggtatcgtcagt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_b05.g1 MSMg01no298_b05.g1 CHROMAT_FILE:
MSMg01no298_b05.g1 PHD_FILE: MSMg01no298_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:40 2005
(360 letters)
>mm_chr1_132948503_132949261
Length = 759
Score = 607 bits (314), Expect = e-178
Identities = 347/358 (96%), Gaps = 3/358 (0%)
Strand = Plus / Plus
Query: 1 cccttgacatcctcttcaagtatccccagaccattcaaccccaacctcacacccaatgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cccttgacatcctcttcaagtatccccagaccattcaaccccaacctcacacccaatgcc 258
Query: 61 gttcaagccagctcattagaagctagctgggttagagaaagaagggctaccaagcagtca 120
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gttcaagtcagctcagtagaagctagctgggttagagaaagaagggctaccaagcagtca 318
Query: 121 tgggagctgacagactggaatagctcctgctattccagagcacccacaccaaatggttca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 319 tgggagctgacagactggaatagctcctgctattccagagcacccacaccaagtggttca 378
Query: 181 cagtccccggtaactccagcttc-agaggatcagacaccc-cttcagtatccacggacgt 238
||||||||||||||||||| || || ||||||||||||| ||||||||||||||| |||
Sbjct: 379 aagtccccggtaactccagcatccaggggatcagacaccctcttcagtatccacggccgt 438
Query: 239 ctgtgtagatgtgcctacactaatgctgtcacgtggaaatgacagcaaaaagaaaatgtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgtgtagatgtgcctacactaatgctgtcacgtggaaatgacagcaaaaagaaaatgtt 498
Query: 299 taccacccccaagttagagacagaagcccataggggtggatggagctggggggtgggg 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 499 taccacccccaagttagagacagaagcccataggggtggatggagttgggggg-gggg 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 759
Length adjustment: 9
Effective length of query: 351
Effective length of database: 750
Effective search space: 263250
Effective search space used: 263250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
