Query= MSMg01no298_d08.b1 MSMg01no298_d08.b1 CHROMAT_FILE:
MSMg01no298_d08.b1 PHD_FILE: MSMg01no298_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:50 2005
(607 letters)
>mm_chr1_32740834_32741844
Length = 1011
Score = 1054 bits (545), Expect = 0.0
Identities = 592/609 (97%), Gaps = 8/609 (1%)
Strand = Plus / Plus
Query: 5 gaattctttataattatccaataagccatcaactaggacacagggttcagtggtagatca 64
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttataataacccaataaggcatcaactaggacacagggttcagtggtagatca 264
Query: 65 tttgcacaaagccttcatttctgtgaacagcaatgaaaaaaaaaaaaaaaaggagaacca 124
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 tttgcacaaagccttgatttctgtgaatagcaatgaaaaaaaaaaaaaaaaggagaacca 324
Query: 125 gta-tcgagtcaagtgtattactatttccatataacagttaaggagacagaattagagaa 183
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtact-gagtcaagtgttttactatttccatataacagttaaggagacagaattagagaa 383
Query: 184 actaaaccagcatggtgtgctcccacagtgagc-aaacctagacctttacatatggcaga 242
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 384 actaaaccagcatggtgtgctcccacagtga-caaaacctagacctttacatatggcaga 442
Query: 243 agatgttattttttaataattaccagtt--tata--taattattttgcttaacatattca 298
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 443 agatgttattttttaataattaccagtttgtataattaattattttgcttaacatataca 502
Query: 299 aatattataagtagttctaccttgattatcctgagctcttataactgtatttttataaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatattataagtagttctaccttgattatcctgagctcttataactgtatttttataaag 562
Query: 359 ccaagtgctctttaagatacagcaagaatctgatctcggctgggaagtatttgaatgtac 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 ccaagtgctctttaagatacagcaagaatctgatctcagctgggaagtatttgaatgtac 622
Query: 419 tgatgtctctgtatcaatgaaaaagatttcctgaatgattggtttatgccagatactgta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgatgtctctgtatcaatgaaaaagatttcctgaatgattggtttatgccagatactgta 682
Query: 479 ttttttattgtccctgtgctgggccacaactttataaaacagttctgcaagacaaaatat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttttttattgtccctgtgctgggccacaactttataaaacagttctgcaagacaaaatat 742
Query: 539 atgactttcgtgaatacaaatgcattgcttcagctaataatcctaaatgggtgcacaagt 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 743 atgactttcgtgaatacaaatgcattgcttcagctaataatcctaaataggtgcacaagt 802
Query: 599 taaaaagga 607
|||||||||
Sbjct: 803 taaaaagga 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1011
Length adjustment: 10
Effective length of query: 597
Effective length of database: 1001
Effective search space: 597597
Effective search space used: 597597
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_d08.g1 MSMg01no298_d08.g1 CHROMAT_FILE:
MSMg01no298_d08.g1 PHD_FILE: MSMg01no298_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:50 2005
(437 letters)
>mm_chr1_32853359_32854195
Length = 837
Score = 783 bits (405), Expect = 0.0
Identities = 429/437 (98%)
Strand = Plus / Minus
Query: 1 attcctactttatatgtcgtttcattaccattaatttaaagcattatctgttcctgcctt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 540 attcctactttatatgtcgtttcattaccattaatttaaagcattagctgttcctgcctt 481
Query: 61 atattcataagaataaatgtagtttaatattatcaagtcttctgcaatgctttcagaaaa 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 480 atattcataagaataaatgtagtttaatattatcaagtcttctgtaatgctttcagaaaa 421
Query: 121 gttttctttgtctcaataactccaggataatatattctattatgcagtttaatatatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gttttctttgtctcaataactccaggataatatattctattatgcagtttaatatatatt 361
Query: 181 atcaagcccactgcacctctttcagaaaatatttctttgtcttaattaatccagggtaat 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 atcaagcccactgcacctctttcagaaaatatttttttgtcttaattaatccagggtaat 301
Query: 241 atattctttaatatgagatattgatatatatgttgcttagacaaatgtctttctttccag 300
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atattctttaagaagagatactgatatatatgttgcttagacaaatgtctttctttccag 241
Query: 301 gatatactactactttctttttcatgggaagccccgtgtcttcgggtttcgtttgttgtg 360
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 240 gatatactactactttctttttcatgggaagccctgtgtcttcgggtttcttttgttgtg 181
Query: 361 ataaaatactgtgaccaaaagcaacttggggctaagggtgaagagttcattttagcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ataaaatactgtgaccaaaagcaacttggggctaagggtgaagagttcattttagcttat 121
Query: 421 aatcacaatccaccact 437
|||||||||||||||||
Sbjct: 120 aatcacaatccaccact 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
