BAC Information

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BAC

Clone NameMSMg01-298D15
Chromosome1 (Build37)
Map Location 75,758,600 - 75,759,101
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298D15.T7 (MSMg01no298_d15.b1)MSMg01-298D15.TJ (MSMg01no298_d15.g1)
ACCAG425338AG425339
length815714
length of high quality
(start - end)
68 (43 - 110)502 (62 - 563)
definitionCHROMAT_FILE: MSMg01no298_d15.b1 PHD_FILE: MSMg01no298_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:52 2005CHROMAT_FILE: MSMg01no298_d15.g1 PHD_FILE: MSMg01no298_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCACATTCAGGACCGATCCGCGGAATTCTAGGTTTCATGAGAGAGAGC
CAGCCAAAAATAAGTAATGAGGAGAAGGAGGAGGAGGAAAGGAGCAGAAG
GAGGAAGAGGGGGAGAATTAAGAGTGTGGCCTTCTTCCATGTGTTTCGTT
CCCATTCTATTGTTCATGTCTCGTCCTTCGCTATCGTCGTCCCTCATTCT
CCCTCTGCCGCCCAGATTTTTTCTCCCCTTTCATCTATCCCTTTGCTTCT
TATTCACCCTCCTCCCCGTTTTATCTCCACACTGATCACCTTTTTTTCTT
TCTTACATTCCCGTTCTCACAATTTACCTCTCCCACTTTTACCCCCTCCC
ATCTGCACTATTTTCCCCCTCCTTCCCTTCTCCTTCCCTCCTTTTTCCCC
CCCCCCCTCCACTTACTATCGCTTGTTATGTCGTCACAACCCCCCGTTTG
CCCCTATCCATCCTATATCCCATTCTTCCGCTCCAAACGCTCAAATTCTA
ATCTCTCCCTCGCCCTTCTTTTTCCCTAATCTTATCCCTTACCTAGATTT
CCCCTGCCGGTCATTATTGCCGCATCCCCCCCCCCAGATAATCTCGCATT
CCTCTGTCTTCCCATGCTTGCCTCCCCTCCCCCTTTTTTCTTCCCTCTTA
TCCTTATCCATTTCCCCCTTCCTATTTACGTCCTACCCCTATCTCTCTTC
CTTCCACCTTTTTTTCGATTCTTTTTTTCCCCCCCCCTATTTTCTCCCCT
CCCTTTTACCTCCCTCTTTTATTCCTTTCTTTTCCCATTATCTAGTTTGT
GCCTTTGCTCCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACACA
AAAAAAATTCAATGGATTTCTGCTTTGAATGCTTGGTAGTTATTCATGAT
AACTCTTTCATATGGAATCACACTTTCTTGCAAATGAAAATATTTATATA
TGATAGTATTCGTACAATTTGGAAAAAAAATTGCAACCTGCACTGGCTTC
CCTTTCCTCTGCGCCTGGCATCCCAGAATATTTTCATTCCTTCCCCAATG
TTAATAAAAAAGAAATCAAACTTTTGCAGGCTTCACTTAGTTCCCGACTT
TTTATCAGATCAGTCTGTGAGCTGAATATTTCCTTCTCTCTTTCAGGATC
CATGAGGGATTGTTTGTGACTGGGCTGGCGGGTCTTAGCATTTGTCTACA
ACAGGAAAGGCAGGTTTAATTTTTGGAGTTGTGTGTAACTTACAACCTAT
ATATTTCTTGCCCCTCCTCTGTCTTTCCCATCTTTCCAGCCCTGCATTTG
AATTTAGAAGACTTTATCCCCCTCTCCCAACCCAGTTTGCCGTTAGTACA
AAGTTAAAGAGTTATGGCTTATAATATCGATCCAGGTTCTCTACAGAGGC
TTTGGTATCTGGGTTCTGCATTTTGATATGGCTGATTGAAAGTGGTGTGG
GTTAAATTTGCTTAACAGGATGTTGCACTCCCCTCTTGAGACAATTTTTA
TCCATTTTATCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_d15.g1 MSMg01no298_d15.g1 CHROMAT_FILE:
MSMg01no298_d15.g1 PHD_FILE: MSMg01no298_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:52 2005
         (502 letters)



>mm_chr1_75758400_75759301
          Length = 902

 Score =  924 bits (478), Expect = 0.0
 Identities = 496/502 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatttctgctttgaatgcttggtagttattcatgataactctttcatatggaatcac 60
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 atggatttctgttttgaatgcttggtagttattcatgagaactctttcatatggaatcac 260

                                                                       
Query: 61  actttcttgcaaatgaaaatatttatatatgatagtattcgtacaatttggaaaaaaaat 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 actttcttgcaaatgaaaatatttatatatgatagtattcgtgcaatttggaaaaaaaat 320

                                                                       
Query: 121 tgcaacctgcactggcttccctttcctctgcgcctggcatcccagaatattttcattcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaacctgcactggcttccctttcctctgcgcctggcatcccagaatattttcattcct 380

                                                                       
Query: 181 tccccaatgttaataaaaaagaaatcaaacttttgcaggcttcacttagttcccgacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccaatgttaataaaaaagaaatcaaacttttgcaggcttcacttagttcccgacttt 440

                                                                       
Query: 241 ttatcagatcagtctgtgagctgaatatttccttctctctttcaggatccatgagggatt 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatcagatcagtctgtgagctgaatatttccttctctctttcaggatccatgagggatt 500

                                                                       
Query: 301 gtttgtgactgggctggcgggtcttagcatttgtctacaacaggaaaggcaggtttaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgtgactgggctggcgggtcttagcatttgtctacaacaggaaaggcaggtttaatt 560

                                                                       
Query: 361 tttggagttgtgtgtaacttacaacctatatatttcttgcccctcctctgtctttcccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttggagttgtgtgtaacttacaacctatatatttcttgcccctcctctgtctttcccat 620

                                                                       
Query: 421 ctttccagccctgcatttgaatttagaagactttatccccctctcccaacccagtttgcc 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 ctttccagccctgcatttgaatttagaagactttatccccttctcccaacccagtttgcc 680

                                 
Query: 481 gttagtacaaagttaaagagtt 502
           ||||||||||||||||||||||
Sbjct: 681 gttagtacaaagttaaagagtt 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)