BAC Information

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BAC

Clone NameMSMg01-298E12
Chromosome1 (Build37)
Map Location 93,067,211 - 93,244,094
singlet/doubletdoublet
Overlap geneGm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl
Upstream geneCxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1
Downstream geneKlhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4, LOC100040419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298E12.T7 (MSMg01no298_e12.b1)MSMg01-298E12.TJ (MSMg01no298_e12.g1)
ACCAG425376AG425377
length727705
length of high quality
(start - end)
415 (50 - 464)433 (52 - 484)
definitionCHROMAT_FILE: MSMg01no298_e12.b1 PHD_FILE: MSMg01no298_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:56 2005CHROMAT_FILE: MSMg01no298_e12.g1 PHD_FILE: MSMg01no298_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,243,681 - 93,244,094)(93,067,211 - 93,067,639)
sequence
CTCACTATTCAAAACGGAGGNGCGGAATTCACCATTTTCCAAGTGCCACC
ATCTTTAAAAGGTGCAGCTTACACCAGAGGGCCGGGGCTGGGAGGGGGCA
CTTGCTTTTGCTGGTGTGTGGGTATTGTGGTGGCAATTTTATTTAGCAAA
CATATATCCAGCTTCAGCTTCTGATGAGACTCTAAAGGCAGAGGAAGCCA
AAGGCAGAAAAGGAGGATTCACCCCATCATCTCAGAGCAGGTCCCAGGTG
GGCCCAGGCTGGAGGCAACTTGGAGCCAGGACCTGTACCACTGCCCTTTG
TGGCTCCCCCAGCACCAAAACCCATGCCCTGTGCCAACTTTATCTCCCTG
GAGGTCCCCGTCTATGGGACCCTTACATAGTCTTGAGTCTGTATAGACTG
CCTTTCTACTGTCATCCCAGAGCCCAAGGTTAGGACTCCCTGCTCCCCCT
AGTGGTAATGCGGAGACACTGTAGGAGACTCTTGGAGATGGCCTGTCCCC
ACTGTGCAGGGCCTATGTCCCTGAGGAAACTTGACTGCCGATCCCCTGTC
CCATTGACAGTCGTATTCTCCCTCAAAAAGGCTCTAACCCCAGAGTCCCT
TCCTTGGAATTCCAGGTTCGGATCCTCCCGGGGCCCCCATCAAGGAGGGG
TGGGGGGAATCCATCCCTTTCTGGGCTGGTCCCCCAAAAAGCGCGGGAAA
TCCAAAAAAATGTTTCTTATCTTTACN
TGGCGGCCGCCTGTTTCTCAGCGGGGGGTGACACTATAGAATTTTCCGCA
AAATTCCTTTCTAATAGTAACTAACACACCGCTTAAAGCTGCATTTGTAC
TTTTCAGATGTTTACATTGTTCCTACCCAGTGCTTCATTGTTGTTGCTTG
ATTAAGATTACCCATTAAGCATTTCTATTTGATGCCTTTGTGTTTAATAA
AAGTGGTTAGCTCCTCTCTCACTCCAGTGCTTTCTGTAGTGGGCATTCCC
AAATGTAATCCACCTGCCAGTCTTTCTATGAATATATAAAAATGATAACT
ACTGTTTATCTGCCAAGAGCTAGATTCCCCAGTGTGTGTATACCTAAACT
CAAAAGTAATTGTTTTGGTCTACACATCAATTTAGTAAAATTATAAAATC
CTGGAGATTTCCCTACAAATAAAATCACTTAACACTTTATTAAAAGGCTA
CATTGACAATTGACCCAGAATAGCCTTGTAATACAAACTAGACATTATCT
TTAATATATTTGGAGAGATTAGCAAACCTGTAGTCATTTGTTTCTCAATA
ACCAAATACCTGATATATATGCTTTTACATATAGACAAAATTACTGAATT
TCCTTTTGGAAAAAATATAAAAAGGCCATTTCAAGTAATGTTCACGAGTT
TTGAGTTACCAATTCCTTTCCTTTTTTCCTTCCCTTTTTTCCTTTTCCAA
TTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_e12.b1 MSMg01no298_e12.b1 CHROMAT_FILE:
MSMg01no298_e12.b1 PHD_FILE: MSMg01no298_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:56 2005
         (415 letters)



>mm_chr1_93243481_93244295
          Length = 815

 Score =  793 bits (410), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctttaaaaggtgcagcttacaccagagggccggggctgggagggggcacttgctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 catctttaaaaggtgcagcttacaccagagggccggggctgggagggggcacttgctttt 555

                                                                       
Query: 61  gctggtgtgtgggtattgtggtggcaattttatttagcaaacatatatccagcttcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctggtgtgtgggtattgtggtggcaattttatttagcaaacatatatccagcttcagct 495

                                                                       
Query: 121 tctgatgagactctaaaggcagaggaagccaaaggcagaaaaggaggattcaccccatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 494 tctgatgagactctaaaggcagaggaagccaaaggcagaaaaggaggattcaccccacca 435

                                                                       
Query: 181 tctcagagcaggtcccaggtgggcccaggctggaggcaacttggagccaggacctgtacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctcagagcaggtcccaggtgggcccaggctggaggcaacttggagccaggacctgtacc 375

                                                                       
Query: 241 actgccctttgtggctcccccagcaccaaaacccatgccctgtgccaactttatctccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actgccctttgtggctcccccagcaccaaaacccatgccctgtgccaactttatctccct 315

                                                                       
Query: 301 ggaggtccccgtctatgggacccttacatagtcttgagtctgtatagactgcctttctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggaggtccccgtctatgggacccttacatagtcttgagtctgtatagactgcctttctac 255

                                                                 
Query: 361 tgtcatcccagagcccaaggttaggactccctgctccccctagtggtaatgcgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtcatcccagagcccaaggttaggactccctgctccccctagtggtaatgcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_e12.g1 MSMg01no298_e12.g1 CHROMAT_FILE:
MSMg01no298_e12.g1 PHD_FILE: MSMg01no298_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:56 2005
         (433 letters)



>mm_chr1_93067007_93067839
          Length = 833

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   cctttctaatagtaactaacacaccgcttaaagctgcatttgtacttttcagatgtttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cctttctaatagtaactaacacaccgcttaaagctgcatttgtacttttcagatgtttac 264

                                                                       
Query: 65  attgttcctacccagtgcttcattgttgttgcttgattaagattacccattaagcatttc 124
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 attgtttctacccagtgcttcattgttgtttcttgattaagattacccattaagcatttc 324

                                                                       
Query: 125 tatttgatgcctttgtgtttaataaaagtggttagctcctctctcactccagtgctttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttgatgcctttgtgtttaataaaagtggttagctcctctctcactccagtgctttct 384

                                                                       
Query: 185 gtagtgggcattcccaaatgtaatccacctgccagtctttctatgaatatataaaaatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtagtgggcattcccaaatgtaatccacctgccagtctttctatgaatatataaaaatga 444

                                                                       
Query: 245 taactactgtttatctgccaagagctagattccccagtgtgtgtatacctaaactcaaaa 304
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taactactggctatctgccaagagctagattccccagtgtgtgtatacctaaactcaaaa 504

                                                                       
Query: 305 gtaattgttttggtctacacatcaatttagtaaaattataaaatcctggagatttcccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtaattgttttggtctacacatcaatttagtaaaattataaaatcctggagatttcccta 564

                                                                       
Query: 365 caaataaaatcacttaacactttattaaaaggctacattgacaattgacccagaatagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaataaaatcacttaacactttattaaaaggctacattgacaattgacccagaatagcc 624

                    
Query: 425 ttgtaatac 433
           |||||||||
Sbjct: 625 ttgtaatac 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)