BAC Information

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BAC

Clone NameMSMg01-298I04
Chromosome1 (Build37)
Map Location 87,601,205 - 87,601,572
singlet/doubletsinglet
Overlap geneSp100
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140
Downstream geneA630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298I04.T7 (MSMg01no298_i04.b1)MSMg01-298I04.TJ (MSMg01no298_i04.g1)
ACCAG425544AG425545
length697727
length of high quality
(start - end)
537 (36 - 572)433 (53 - 485)
definitionCHROMAT_FILE: MSMg01no298_i04.b1 PHD_FILE: MSMg01no298_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:13 2005CHROMAT_FILE: MSMg01no298_i04.g1 PHD_FILE: MSMg01no298_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCAGAGAATGGGCGGAATTCTTTACAGTTACCCAAGGGTGCACTTTCC
GTGGCTGGCCGCATACTTTACATGCTTTTGGATTTCCTCGCTACAAGAAG
AAATGTTGTAAACAACTTCAAGATCAGTGTGACCCCAGAATTCTAGAACA
AATGGCCTTTGCCTATACCAAAGTGGCTTAGAAATCTCTCCAGTCCAAAG
TATGTTTCAAATATTTATTTGTGTGTGTGTGTCTGTGCGTTAATATACAC
ATAATATATTACATAGTATGTATATAAATATAATATATATGAATACACAG
GCACACACATACATACACATTTACATACACATTCACAAACACCATATATG
TATTTATGTATGTGTGTGCATTAACACACACACACACACACACACACTGA
CACACGCCTACAAAGGCCAGAGGGAGAATCTGAGCCCTTGGACTTGGATT
GCAGGAGATAGTAGTCTGGTGTGTCAGTGCTGGGAATTGAACCTGGGTCC
TCTGGAAGAGCAGCCAGTGCTCTAAACTACTGATCTATCTCTCCAGCCCA
TCTCCTCAAAATACTAAGAAGTATTATTGAACAGAGATTTTAGAAGACAT
TCTGGCATGAAATAAAGTTCATAGAATTGTTGGGCTATGTCAGACTAGAA
AAGTTTATATTGTGAAGACAGCAAATTCTGAAAGTGAAATAACAGAG
GGCGGCCGCCTGGTTTCGCACAGGGGTGAACTATAGAAGGTTTCAAAAAT
ACAGGTTAGCCTGGGACAGAGCTAGTTGAAGCCCAGAAGTGGTGGGGATC
CCTCCCAGCTAGCTTATTGTCTTTACTTATAGCAAGCAGATATCTGAATT
CATTTGCAATGTTTTGTTTTATTTTGTTTTTTAAGAATTTGCTGTTCTTT
TATTAGAATCAAGTTGCTACAGTCATAAAATGCTGACTCATGGGATAACC
AAAAAAGAACCTCAAGAAAATGACTGAATTGATATGCAAATGAAAGACTG
TTTTTTGGTCTGCAAGAGCTAAGCAACCTGGATGAGCTGTCTGGAGAGAA
AACAGAGTTCTTTTAGAATTTTTTTCTAGTAGCTACCCAGAGAGAACTGC
TTGGAGAGCAAATACAGGTCTTTTACAATCTTTTTCCTGCAAGAGAGCAA
AAGAGAGCTGTCTCAGGCAGAGGAAACTGTCTCATGCAGAAAGCTGCGTT
GAGCAGAAAGCTATCTTGAGCATACTACAGATCCAAGAGCTATCTACAGA
GAGCTCGCTAGGGAGCCATCTTGAGCAGATTTACAAGGCTAAATCAGCTT
GTACCCATGACTTGACTTTTAATCATTTTTTTGGATGGTGGTGAAAACTC
CTCCTTCCTCAAAACCCTTCTCCAAGCCTGAATGTTGACCCTTAACCATA
ACTCCTTGAAGTTTATATTCCCATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_i04.b1 MSMg01no298_i04.b1 CHROMAT_FILE:
MSMg01no298_i04.b1 PHD_FILE: MSMg01no298_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:13 2005
         (537 letters)



>mm_chr1_87601198_87602134
          Length = 937

 Score =  696 bits (360), Expect = 0.0
 Identities = 367/370 (99%), Gaps = 2/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggtgcactttccgtggctggccgcatactttacatgcttttggatttcctcgctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagggtgcactttccgtggctggccgcatactttacatgcttttggatttcctcgctaca 316

                                                                       
Query: 61  agaagaaatgttgtaaacaacttcaagatcagtgtgaccccagaattctagaacaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agaagaaatgttgtaaacaacttcaagatcagtgtgaccccagaattctagaacaaatgg 256

                                                                       
Query: 121 cctttgcctataccaaagtggcttagaaatctctccagtccaaagtatgtttcaaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctttgcctataccaaagtggcttagaaatctctccagtccaaagtatgtttcaaatatt 196

                                                                       
Query: 181 tatttgtgtgtgtgtgtctgtgcgttaatatacacataatatattacatagtatgtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatttgtgtgtgtgtgtctgtgcgttaatatacacataatatattacatagtatgtatat 136

                                                                       
Query: 241 aaatataatatatatgaatacacaggcacacacatacatacacatttacatacacattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aaatataatatatatgaatacacaggcacacacatacatacacatttacatacacattca 76

                                                                       
Query: 301 caaacaccatatatgtatttatgtatgtgtgtgcattaacacacacacacacacacacac 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  caaacaccatatatgtatatatgtatgtgtgtgcattaacacacacacacacacacacac 16

                     
Query: 361 actgacacac 370
           ||  ||||||
Sbjct: 15  ac--acacac 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)