Query= MSMg01no298_j22.b1 MSMg01no298_j22.b1 CHROMAT_FILE:
MSMg01no298_j22.b1 PHD_FILE: MSMg01no298_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:21 2005
(664 letters)
>mm_chr1_77902579_77903643
Length = 1065
Score = 1232 bits (637), Expect = 0.0
Identities = 658/665 (98%), Gaps = 1/665 (0%)
Strand = Plus / Plus
Query: 1 gacacagaaaaaccttgtaatgaaaaaccaaaaaccaaccaaccaatgaacaaaccgcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gacacagaaaaaccttgtaatgaaaaaccaaaaaccaaccaaccaatgaacaaaaagcct 260
Query: 61 tgcagaccctagctgaagagctgttgacatcagtatctgctatgggaaaaagtcagtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgcagaccctagctgaagagctgttgacatcagtatctgctatgggaaagagtcagtttc 320
Query: 121 ctttaagtgtgttttcaggtgggttgatcatgctccagtggatggctatatactcacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttaagtgtgttttcaggtgggttgatcatgctccagtggatggctatatactcacatg 380
Query: 181 gatatgggcagcactaataatactcaaaagtcacaaaaacaatttgaaatttagagggag 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatgggcagcactaataagactcaaaagtcacaaaaacaatttgaaatttagagggag 440
Query: 241 acatggcattgagaataaggggacacaaggaaagtattggaaaggggagttgcaggtaaa 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 acatggcattgagaataaggggacacaaggaaagtattggaaaagggagttgcaggtaaa 500
Query: 301 tatgatcaaaatatattgtatacatatatgcataaaattctcaaagaataaatatgtgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgatcaaaatatattgtatacatatatgcataaaattctcaaagaataaatatgtgta 560
Query: 361 atttatatgcatatacaaataattcatatgcatatgcacatacatatatacatacataac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttatatgcatatacaaataattcatatgcatatgcacatacatatatacatacataac 620
Query: 421 caaacagagacatttaaattttgccacttacaaattcataaaatggcagctgggattgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaacagagacatttaaattttgccacttacaaattcataaaatggcagctgggattgat 680
Query: 481 tctttctgttatcctgcttcctggtgccatactgaaatcagtgtgtggattaaaatctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttctgttatcctgcttcctggtgccatactgaaatcagtgtgtggattaaaatctct 740
Query: 541 cagcctcctctttctgtagaatgccagcctcttagcaaaccagcacgacctatgtcacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagcctcctctttctgtagaatgccagcctcttagcaaaccagcacgacctatgtcacca 800
Query: 601 ctatgtgcaaagcttcatggaggactgctctttgcaaa-ggttacaaagaattcaaggag 659
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 801 ctatgtgcaaagcttcatggaggactgctctttgaaaaaggttacaaagaattcaaggag 860
Query: 660 gcagg 664
|||||
Sbjct: 861 gcagg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space: 689970
Effective search space used: 689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_j22.g1 MSMg01no298_j22.g1 CHROMAT_FILE:
MSMg01no298_j22.g1 PHD_FILE: MSMg01no298_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:21 2005
(475 letters)
>mm_chr1_78065534_78066413
Length = 880
Score = 866 bits (448), Expect = 0.0
Identities = 470/480 (97%), Gaps = 5/480 (1%)
Strand = Plus / Minus
Query: 1 tcacccattcctgtttcctgaatcttggagttctgtggtcaggaaagaactattttctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcacccattcctgtttcctgaatcttggagttctgtggtcaggaaagaactattttctcc 621
Query: 61 aatagggaatcagctcatactttctgtaattgacttttaaggtctgactcgagctgacat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 aatagggaatcagctcatactttctgtaattgacgtttaaggtctgactcgagctgacat 561
Query: 121 gaaaagctgtcattttttgggaaatgtcaagggtcagacatgtcttaattcagtgtgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaagctgtcattttttgggaaatgtcaagggtcagacatgtcttaattcagtgtgaaa 501
Query: 181 ctgaggtagaatgtgtgcttttatgggctcttggcaaaaggtgtttttttttttttttt- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgaggtagaatgtgtgcttttatgggctcttggcaaaaggtgttttttttttttttttt 441
Query: 240 ----gcaaataaatgatatagaggtctcttcgagactctccacagcctcctaggaattga 295
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 tttggcaaataaatgagaaagaggtctcttccagactctccacagcctcctaggaattga 381
Query: 296 ctttaaccatgtgatgtgagataacttcttctcaaagaataggtccatttaggcaaaaga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttaaccatgtgatgtgagataacttcttctcaaagaataggtccatttaggcaaaaga 321
Query: 356 ggattttctctttcccacgaccagagaaaaagactgcacagaacttctgatcacatgtct 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 ggattttctctttcccacgaccagagaaaaagactgcgcagaacttctgatcacatgtct 261
Query: 416 tcataaatacatttcatggctaagtgcatgtatatggattggagttgggatgggggaggt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcataaatacatttcatggctaagtgcatgtatatggattggagttgggatgggggaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 880
Length adjustment: 10
Effective length of query: 465
Effective length of database: 870
Effective search space: 404550
Effective search space used: 404550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
