BAC Information

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BAC

Clone NameMSMg01-298M08
Chromosome1 (Build37)
Map Location 7,660,806 - 7,661,112
singlet/doubletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069
Downstream geneLOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298M08.T7 (MSMg01no298_m08.b1)MSMg01-298M08.TJ (MSMg01no298_m08.g1)
ACCAG425730AG425731
length757723
length of high quality
(start - end)
297 (60 - 356)359 (58 - 416)
definitionCHROMAT_FILE: MSMg01no298_m08.b1 PHD_FILE: MSMg01no298_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:31 2005CHROMAT_FILE: MSMg01no298_m08.g1 PHD_FILE: MSMg01no298_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCATGAGAGACCGCGGAATTCTTGG
TGTTTCCTTCCTTTGATGAATATGAAGAGACCTTCCCCATCTCATTTCTT
GGGACTATTTGCTTGGAAAACTTTTTTGCAGCCTCTTACTCTGAGGTAGT
GTCTGTCTTTGTCAATGAGGTATATTTCATTGTGTGCAGTAAAATGCTGG
ATTTTATTAACATATCTAATCTGTTAGCCTGCGTCTTTTTATTGAGGAAT
TGAGTCTTATTGATCCTGAGAGAGATTAAAGACAGATGATTGTTAGTTCC
TGTTATTTTTGTTGCTAGAGGTGGTATTATGTGTGCATGATTTTTTTCTT
TTGGTTTTGTTATGAGCTGATAATTTTTTATGTATCTATATGTTTGCAGT
TACCATCCTTGTGTTGGAGATTTTATTCTTGTAGTCTCTGTATGGCTCGA
TTGGTACAAAGATATTGTTAAAAATTTGTTTTGTCATGCGATATCTTGGT
CTTCTTCATGTACGATACGTGAGGGATTACATATATTATCCTGGGCTTGA
GATCTGAGTTCTTTTAAGGTCTGGATGACTTCTGTCCAGGCTCTTTCTGT
TTTTTTAAAGCCTTTCTTGCAGAAATCCTGCCGCATATATTGTTAATTGT
CTGGACTTTATAATATTAACTTGAACCTTTTTTCCTCCTCTAAAAACTTT
TAAAAAATTCTTTTAAACTGTTTCCCGCACAATTTTATTTAGTCTTCGAA
TTATTAC
TGGCGGCCGCCTGGTTCCAAAATGTGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATATAAGATCCTTTGTGTACAGAGATGTTTAAAATCATTCAGA
ATGCAAATTAAATGTTGTTTGTAACTGGAATATTTGTACAGTAAATGAAA
TCTTGGCTATTCCTCATAGAGTTAACAATAGAGTTACAAAATGACTTAGA
GTCATTACTACTAACTTTTAATCAGGACAAATACAAACATTGATTCACCA
AGAATTCTATCAGTATTCATGGCAGTTAATCAAAATAGATTAAAAAAAAT
TTAAAACTTATGATACTTTATATGAATTAACAGATAAATATTTAAATATT
CATATAATCAATATTGCTCACGACCAACAAAGACACTTGATCTATTAGCA
TACCTTGAAATATACATAAATTTGATAACAAAAAAAATTACGAAAAATAA
ACCAAGTTTAAACCAAAATACAAAATACGAGTCTGTATAAATGAATTTCA
AGAACAGATAAAAATTAACACATAATGATGAACAGCCCACCTGATTTTGC
TTGGAGGGATTGATGGGAAGACTGACTGAAAGGTGACTAAGTTTCCAAAA
CATGAAAATCTTGTTTATTGCAGTGATGACTACACCGTAATGATACTCCT
TTAAGCCATTGTCTTAATTAACATTTGGTTGCCACTTTGACATCTCCTTT
GAGTTATCTGTGGAGCAACAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_m08.g1 MSMg01no298_m08.g1 CHROMAT_FILE:
MSMg01no298_m08.g1 PHD_FILE: MSMg01no298_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:31 2005
         (359 letters)



>mm_chr1_7660354_7661112
          Length = 759

 Score =  528 bits (273), Expect = e-154
 Identities = 300/311 (96%), Gaps = 6/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 51  ttaaatgttgtttgtaactggaatatttgtacagtaaatgaaatcttggctattcctcat 110
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ttaaatgttgtttttaactggaatatttgtacagtaaatgaaatcttggctattcctcat 700

                                                                       
Query: 111 agagttaacaatagagttacaaaatgacttagagtcattactactaacttttaatcagga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agagttaacaatagagttacaaaatgacttagagtcattactactaacttttaatcagga 640

                                                                       
Query: 171 caaatacaaacattgattcaccaagaattctatcagtattcatggcagttaatcaaaata 230
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 639 caaatacaaacattgattcaccaagaattctatcagtattcatgacagttaatcaaaata 580

                                                                       
Query: 231 gattaaaaaaaatttaaaactta--tgatactttatatgaattaacagataaatatttaa 288
           |||||||||||  ||||||  ||  |||||||| ||||||||||||||||||||||||| 
Sbjct: 579 gattaaaaaaa--ttaaaa--tacatgatacttcatatgaattaacagataaatatttac 524

                                                                       
Query: 289 atattcatataatcaatattgctcacgaccaacaaagacacttgatctattagcatacct 348
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 523 atattcatataatcaatattgctcacaaccaacaaagacacttgatctattagcatacct 464

                      
Query: 349 tgaaatataca 359
           |||||||||||
Sbjct: 463 tgaaatataca 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)