Query= MSMg01no298_n17.b1 MSMg01no298_n17.b1 CHROMAT_FILE:
MSMg01no298_n17.b1 PHD_FILE: MSMg01no298_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:37 2005
(702 letters)
>mm_chr1_97514152_97515255
Length = 1104
Score = 1230 bits (636), Expect = 0.0
Identities = 646/650 (99%), Gaps = 2/650 (0%)
Strand = Plus / Minus
Query: 55 tctgaatttagtatactgaatactaaagttccccatttactaaaatgtctacgattgaag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 tctgaatttagtatactgaatactaaagttccccatttactaaaatgtctacgattgaag 1045
Query: 115 gtatttaatgctacatcctcaagtttatgcttcaaagagtaataaggaataaaaggagta 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 gtatttaatgctacatcctcaagtttatgcttcaaagagtaataaggaataaaaggagta 985
Query: 175 ataagaccaaaaacaaaagaacaaacaaacaaaaaaaccaaaaccaaaacatacgcacac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ataagaccaaaaacaaaagaacaaacaaacaaaaaaaccaaaaccaaaacatacgcacac 925
Query: 235 ataaaaaaacaaaaaacaactactgaagaggaacatcctttgaaatacttgtagctgaaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ataaaaaaacaaaaaacaactactgaagaggaacatcctttgaaatacttgtagctgaaa 865
Query: 295 atgtgtgaccaaggtagatttatgaatcccacttctctctcgactgtcatatatggtggg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 atgtgtgaccaaggtagatttatgaatcccacttctctctcgactgtcatatatggtggg 805
Query: 355 tttggcatttcctgtttctggttttctcatttaactttgtttacacaggaaattcgtcct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttggcatttcctgtttctggttttctcatttaactttgtttacacaggaaattcgtcct 745
Query: 415 tggagtgctcactatgacagtctgataatgaggaggcatgctgtccttgccaggggaatg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggagtgctcactatgacagtctgataatgaggaggcatgctgtccttgccaggggaatg 685
Query: 475 gcgcttagagaatagaacatgcaaaagccattgtaaagaggaaaat--aaaaaaaaacta 532
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 684 gcacttagagaatagaacatgcaaaagccattgtaaagaggaaaataaaaaaaaaaacta 625
Query: 533 tttttccttattgtattctctggaatctgtacaatgagatcattgatgaagattagggct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttttccttattgtattctctggaatctgtacaatgagatcattgatgaagattagggct 565
Query: 593 ttacatcctgaagaaatgcagggatcacagtattctgagagtttccaatagagctgaata 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttacatcctgaagaaatgcagggatcacagtattctgagagtttccaatagagctgaata 505
Query: 653 gaaaaggcattcatttagacaaaattttgctacaagttgatgccacccag 702
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 gaaaaggcattcatttagacaaaattttgttacaagttgatgccacccag 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1104
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1094
Effective search space: 757048
Effective search space used: 757048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no298_n17.g1 MSMg01no298_n17.g1 CHROMAT_FILE:
MSMg01no298_n17.g1 PHD_FILE: MSMg01no298_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:37 2005
(633 letters)
>mm_chr1_97310132_97311164
Length = 1033
Score = 1149 bits (594), Expect = 0.0
Identities = 623/636 (97%), Gaps = 9/636 (1%)
Strand = Plus / Plus
Query: 1 agcattatcccctaacttctttgttcactgtgaaaaatatttgtaatatctggacacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agcattatcccctaacttctttgttcactgtgaaaaatatttgtaatatttggacacatt 260
Query: 61 ttgtcatttacaataccaaatatgatactgacttttaaaaaatgttgtttcagaatacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcatttacaataccaaatatgatactgacttttaaaaaatgttgtttcagaatacta 320
Query: 121 cataattaatttaataaattttaaaaactacacattcctcatagttgtaaaggtattcaa 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataattaatt-aataaattttaaaaactacacattcctcatagttgtaaaggtattcaa 379
Query: 181 gagggatctactcttctcatatgccttcacatcactgacataaaacattcttacagtcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagggatctactcttctcatatgccttcacatcactgacataaaacattcttacagtcgt 439
Query: 241 ctatga---ttttttaccttcattcaaagatataggttattgtgaggtcagagagtgttc 297
|||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctatgaaaata----accttcattcaaagatataggttattgtgaggtcagagagtgttc 495
Query: 298 tatcaaacataacactgtattcataaaataaaatacactgaaattaaggttgctgtaatg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tatcaaacataacactgtattcataaaataaaatacactgaaattaaggttgctgtaatg 555
Query: 358 attatgcctctggcaaatgcatttttcttcacaagtcaaaaaagtaattattaaattatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 attatgcctctggcaaatgcatttttcttcacaagtcaaaaaagtaattattaaattatt 615
Query: 418 agctttacaatcagttatttttttactcttctgttatgtctccatcttaccctaccgttc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agctttacaatcagttatttttttactcttctgttatgtctccatcttaccctaccgttc 675
Query: 478 acatatggaagcaactaaacgtcttcttaaagtgcttacaacagaatcaaggacgatgaa 537
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 676 acatatggaagcaattaaacgtcttcttaaagtgcttacaacagaatcaaggacgacgaa 735
Query: 538 accaactagctagtttgacttcatcacctagaggaagggtgatgaagaaaaacagtgcat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 accaactagctagtttgacttcatcacctagaggaagggtgatgaagaaaaacagtgcat 795
Query: 598 tgccagtttctatttttttattttttttttattttg 633
||||||||||||||||||||||||||||| ||||||
Sbjct: 796 tgccagtttctatttttttattttttttt-attttg 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
