BAC Information

Click to search

BAC

Clone NameMSMg01-299E22
Chromosome1 (Build37)
Map Location 156,590,497 - 156,590,784
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299E22.T7 (MSMg01no299_e22.b1)MSMg01-299E22.TJ (MSMg01no299_e22.g1)
ACCAG426118AG426119
length793753
length of high quality
(start - end)
342 (77 - 418)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no299_e22.b1 PHD_FILE: MSMg01no299_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:12 2005CHROMAT_FILE: MSMg01no299_e22.g1 PHD_FILE: MSMg01no299_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCG
GAATTCAACCCTCTGTAAGGGGATCAGTGGTCTTCCTCACAATTCGGTAG
CTGGGTATTAGGAGCAAGTCCCTCAGGGGAGCAAAGCAGAAGCAGATGGC
GTTCTTGTGACATCACCTCGTGAGTCATGAAGCCTCACATCTGCTCTGCA
CACATCCAGTCTCGAAATGAGAAAACACAAGAGACTGTGCTGGAGGAGGG
CCCACACACACTGTAAAGAAGTGCGAGTAATGGGAGATCCTATTGTGGTC
ATCTTTGGAAAATTCTCGTATGTGTGCATGTGTGTGTCTCTGTGTGTGTG
TCTCTGTGTGTGCATGTGTGTGTATGTGTGTGTGTGTATGTGTGCATGTG
TGTGTATGTGTGTGCGCGCCCGTCGTGCATGTGAGTGCGTGTTTCTGCCC
TCTGCCGCCCACCATAACCATACCTCCCCTTTTCCTCCCCCTCCACCTCC
TCTCCCCCCCCCTCTTCTTCCCCTCTATTTATACCATCTATTATCCTTCT
CCCCTCTACTTTCACACACACACTCACCCTCACCCCCTTACAACCTCCCT
TCCCTCCCTTACCCCTCTTCCCCCTCCTCCCCCATCCCCCTCCTCCCCCC
CCCCTACCCCCCCTCCCACCTCTTCCTCCTCCCCCTTCACCCCCCATTCC
TCCACCCTCTTCCCCCCACATCTTCCTCCCATTCATCCACAACCAACATC
CACCACCTCTCCATTTTTTCGCCATTTCCTCTCCCCTCTTATT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGTGTCCAAGGAAATGGA
AACAAGGCCAATCACTTTAACTTTACCTGTAATAACAGAAAGGGCATCAA
GATCGCCAGCACTGGAGGAAATGAACTAACTTAGGAGCAGCAATTATTCG
TACAGTACAGTGAAGCACCGTGCAGAAACTAAGATAATGAACTAAATGTG
CATGTAATGATGCCAGTAAATCTTTGAAATAAACTTCCACTTTACAGCGA
AAAGACACAACCCATGTATCATTCATTTAAAACTCACAAAGATACTCATG
TATATATTAATGCATGCATGTGTAGCAGAATTACTAAAATTTACTTACTA
AGAAATATCAATTCCAGAGAACTCCTGAAGTGAGGAATGGGGATAGAAAT
TCATTTATAGAGCTTTACTCATCTAAAACTGGGAAAGAGATGAAGCAAGC
ATGAAAAATGGTGTCCATTTAATCCTGGTATTATATACATAGATGCCAAT
TTCCATATTAAATATTTGAAATATAATTGTGATAAGTACTTACAAGAAAT
TCCGAGGCCAATAACTGAAGGCCCCAGAGCTGCAATGACCACTTCGTCCA
TTACTGGTAGAGATGTAATTAGTGCCAACCTTAGTACCTGATGATTGGTC
AGTGTACCCCACGCAGCCATAAATATGCCCACAGCCTGAGCTTCCTAATT
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_e22.g1 MSMg01no299_e22.g1 CHROMAT_FILE:
MSMg01no299_e22.g1 PHD_FILE: MSMg01no299_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:12 2005
         (288 letters)



>mm_chr1_156590297_156590984
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgtccaaggaaatggaaacaaggccaatcactttaactttacctgtaataacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtgtccaaggaaatggaaacaaggccaatcactttaactttacctgtaataacagaa 260

                                                                       
Query: 61  agggcatcaagatcgccagcactggaggaaatgaactaacttaggagcagcaattattcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggcatcaagatcgccagcactggaggaaatgaactaacttaggagcagcaattattcg 320

                                                                       
Query: 121 tacagtacagtgaagcaccgtgcagaaactaagataatgaactaaatgtgcatgtaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagtacagtgaagcaccgtgcagaaactaagataatgaactaaatgtgcatgtaatga 380

                                                                       
Query: 181 tgccagtaaatctttgaaataaacttccactttacagcgaaaagacacaacccatgtatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccagtaaatctttgaaataaacttccactttacagcgaaaagacacaacccatgtatc 440

                                                           
Query: 241 attcatttaaaactcacaaagatactcatgtatatattaatgcatgca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcatttaaaactcacaaagatactcatgtatatattaatgcatgca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)