TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGTAAACACCGAGAAATGCCCTTGCTTGGCTATTCAAAAGCAGCTT
AAGGCAAGAATTTCTTTTACAAATTTGATTATGGTCTATATAATTTTAAA
CTGCCCATATAACTGTATATATAATTTATATATTAACTTTATATTATTTA
TTTTTAAGGAGAACTGGAAAGAAACTATATTTAATTTGATCTTTCATTCC
TAGACAAATAGTTTGAAGGTAAAGCTATAGAATGAACTATAAGAAACATT
AAAACCTAGTAGCCAGTGATAAAGATATTATTCCATATTTCTTTTATTAT
AAATTAATTATTTTATTTATTATCATCCTAAATGTTGCCCACCTCCTGGT
CTCCCCTTGCAGAATTCTTCCCCCATCCTCCCTCCCCTTCACCTCTGAGA
GGGTTGCCCACCCCATCCCTGGCATACCCCATCCCTGGGGTATCAAGTCT
CTACAGGATTAGACACATCTTCTCCCACTGAGGCCACACAAGGCAGTCCT
CTGCTACATGTGCCTAGGGCCTCAGACAAGTCCTTATATGCTCTTTGCTT
TGTGGCTCAGTGTCTGGAAGCTCCCAGGGGTCCAGGTTAGTTAACATTGT
TGATCTTCCTATGAGTTGCTGTCCCTTTCATTTCCAATTTCCTTCAATTC
TAACCCATAATTCT

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAGTGGATGGACCTGGAGGGCATCATTCCTGAGC
GAGGTAACACATTCACAAAGGAACTCACACAATATGCACTCACTGACAAG
TGGATATTAGCCCCTACCCCATGACACCCAATACATAAGACACCACTTGC
TAAACACATGAAATTCTA

Query= MSMg01no299_n02.b1 MSMg01no299_n02.b1 CHROMAT_FILE:
MSMg01no299_n02.b1 PHD_FILE: MSMg01no299_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:50 2005
         (560 letters)



>mm_chr1_96671474_96672433
          Length = 960

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtaaacaccgagaaatgcccttgcttggctattcaaaagcagcttaaggcaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtaaacacagagaaatgcccttgcttggctattcaaaagcagcttaaggcaa 264

                                                                       
Query: 65  gaatttcttttacaaatttgattatggtctatataattttaaactgcccatataactgta 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 gaatttcttttacaaatttgattatggtctatataactttaaactgcccatataactgta 324

                                                                       
Query: 125 tatataatttatatattaactttatattatttatttttaaggagaactggaaagaaacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatataatttatatattaactttatattatttatttttaaggagaactggaaagaaacta 384

                                                                       
Query: 185 tatttaatttgatctttcattcctagacaaatagtttgaaggtaaagctatagaatgaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttaatttgatctttcattcctagacaaatagtttgaaggtaaagctatagaatgaac 444

                                                                       
Query: 245 tataagaaacattaaaacctagtagccagtgataaagatattattccatatttcttttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tataagaaacattaaaacctagtagccagtgataaagatattattccatatttcttttat 504

                                                                       
Query: 305 tataaattaattattttatttattatcatcctaaatgttgcccacctcctggtctcccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tataaattaattattttatttattatcatcctaaatgttgcccacctcctggtctcccct 564

                                                                       
Query: 365 tgcagaattcttcccccatcctccctccccttcacctctgagagggttgcccaccccatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcagaattcttcccccatcctccctccccttcacctctgagagggttgcccaccccatc 624

                                                                       
Query: 425 cctggcataccccatccctggggtatcaagtctctacaggattagacacatcttctccca 484
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 cctggcataccccatccctggggtgtcaagtctctacaggattagacacatcttctccca 684

                                                                       
Query: 485 ctgaggccacacaaggcagtcctctgctacatgtgcctagggcctcagacaagtccttat 544
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgaggccacacaaagcagtcctctgctacatgtgcctagggcctcagacaagtccttat 744

                           
Query: 545 atgctctttgctttgt 560
           ||||||||||||||||
Sbjct: 745 atgctctttgctttgt 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)