BAC Information

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BAC

Clone NameMSMg01-299N04
Chromosome1 (Build37)
Map Location 81,423,285 - 81,503,203
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299N04.T7 (MSMg01no299_n04.b1)MSMg01-299N04.TJ (MSMg01no299_n04.g1)
ACCAG426489AG426490
length730731
length of high quality
(start - end)		516 (44 - 559)604 (72 - 675)
definitionCHROMAT_FILE: MSMg01no299_n04.b1 PHD_FILE: MSMg01no299_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:51 2005CHROMAT_FILE: MSMg01no299_n04.g1 PHD_FILE: MSMg01no299_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,423,285 - 81,423,795)(81,502,691 - 81,503,203)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCAACTGCACAACTAGTGTAAGGCCAATACATTATTAGTATTAATT
CCATGTACAGAGTCATTGTGCTTGAACTTGCTACTATCATGTCTACCAGG
TACTACCTTGTTTTATTGTCATTCAAAGAAGAGGGAGCTCTCTATTTTTT
AACTTAGTGGTTCTCAACATTTCTGAAGCTATGACCCTGGGTAGAGTTAG
TTCTTCATGTTGAGATGACCCTCAACTATAAAATTATTTTTCTCCCTCTT
TTTTATTAGATATTTTCTTTATTTACATATGGACCATTATTCCCTTTCCC
CACTTCCCCTCTGGAAACTTATCATATCCCCCTCCCCCTGTTCACCAACC
CACTCACTCCTGCTTCCCTGTCCTGGCATTCTACTACATTGGGGCATTGA
GCCCTCTCAGGACTAAAGGACTCTCCTCCCATTGATGTCCATCAAGGCCA
TCCTCTGCTATATATGCAGCTGAAGCCATGGGTCCCTCCATGTGTACTCT
TTGGTTGGCGATTTAGTACATGGGAGCTCTGGGGGTACTGGTGGGTTCAT
ATTGTTGTTCTCCTATGGTGTTGCAAGCTCCTTCTGGTCTGTCAGTCCTT
TCTCTAGCTCCCCCATTGGGGAACTTGTGCTCCATCCAAAGGTTGGCTGA
GAGTATCCACCTCTGTATTTTGTCCAGCAN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAATAATCCAAATGCTTAAATTTTAGGA
TGATGTTAGACTTTTTAAAGGCTAACTCATGTAAGATATTACTTGGATGG
GTGCATTTTCTAGTTATTCTGCAGAATTAGTTCTCAATACCAGAAGCATA
TAGATTTTGAATAGTAGCAGAATTATAACCTACTTTGTGATTTGTTTTTA
TTTTGTGCAATGTACAATCTTTATGTGAAATAAGAAACAAATGTAAAATA
CATAGTCATATAGATAATGCATATATATCATGTGTATAGACATACATTTA
TATACTAGAAATAAGGAGATAAAATACATACATAGGGGTTGTCGAGGAGC
CTCAGTGGGTAAGAGAGTTTACGATGCAAACATGAGGACCTGTGTTCATG
GATGTAAAATGTTATGTTTTACCACTCATGCAGGAAAGTCCGTTGCTCTA
GAAGGCAGAGACAGAAAATCATTAGGCTCTACTGGCTTAGCATAGCACTG
GGTAGACTTGGAGACACTGTATCAAAGTAAGTAGATTAGAATGATGTAGT
AGCTATTTAATGTCCTCCTCTGAATTCCATACATACACATGTACATGCAA
CCCATGCTCACAGTGGACCTGCATATAACATGTTAACACTTGCCACCATA
CATGCCTTTATACTTATTCATACAGTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_n04.b1 MSMg01no299_n04.b1 CHROMAT_FILE:
MSMg01no299_n04.b1 PHD_FILE: MSMg01no299_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:51 2005
         (516 letters)



>mm_chr1_81423081_81423996
          Length = 916

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaactgcacaactagtgtaaggccaatacattattagtattaattccatgta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccaactgcaaaactagtgtaaggccaatacattattagtattaattccatgta 264

                                                                       
Query: 65  cagagtcattgtgcttgaacttgctactatcatgtctaccaggtactaccttgttttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagtcattgtgcttgaacttgctactatcatgtctaccaggtactaccttgttttatt 324

                                                                       
Query: 125 gtcattcaaagaagagggagctctctattttttaacttagtggttctcaacatttctgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcattcaaagaagagggagctctctattttttaacttagtggttctcaacatttctgaa 384

                                                                       
Query: 185 gctatgaccctgggtagagttagttcttcatgttgagatgaccctcaactataaaattat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctatgaccctgggtagagttagttcttcatgttgagatgaccctcaactataaaattat 444

                                                                       
Query: 245 ttttctccctcttttttattagatattttctttatttacatatggaccattattcccttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttctccctcttttttattagatattttctttatttacatatggaccattattcccttt 504

                                                                       
Query: 305 ccccacttcccctctggaaacttatcatatccccctccccctgttcaccaacccactcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccccacttcccctctggaaacttatcatatccccctccccctgttcaccaacccactcac 564

                                                                       
Query: 365 tcctgcttccctgtcctggcattctactacattggggcattgagccctctcaggactaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctgcttccctgtcctggcattctactacattggggcattgagccctctcaggactaaa 624

                                                                       
Query: 425 ggactctcctcccattgatgtccatcaaggccatcctctgctatatatgcagctgaagcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggactctcctcccattgatgtccatcaaggccatcctctgctatatatgcagctgaagcc 684

                                          
Query: 485 atgggtccctccatgtgtactctttggttgg 515
           |||||||||||||||||||||||||||||||
Sbjct: 685 atgggtccctccatgtgtactctttggttgg 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no299_n04.g1 MSMg01no299_n04.g1 CHROMAT_FILE:
MSMg01no299_n04.g1 PHD_FILE: MSMg01no299_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:51 2005
         (604 letters)



>mm_chr1_81502691_81503694
          Length = 1004

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaataatccaaatgcttaaattttaggatgatgttagactttttaaaggctaactcatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 agaataatccaaatgcttaaattttaggatgatgttagactttttaaaggctaacttatg 454

                                                                       
Query: 61  taagatattacttggatgggtgcattttctagttattctgcagaattagttctcaatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taagatattacttggatgggtgcattttctagttattctgcagaattagttctcaatacc 394

                                                                       
Query: 121 agaagcatatagattttgaatagtagcagaattataacctactttgtgatttgtttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaagcatatagattttgaatagtagcagaattataacctactttgtgatttgtttttat 334

                                                                       
Query: 181 tttgtgcaatgtacaatctttatgtgaaataagaaacaaatgtaaaatacatagtcatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttgtgcaatgtacaatctttatgtgaaataagaaacaaatgtaaaatacatagtcatat 274

                                                                       
Query: 241 agataatgcatatatatcatgtgtatagacatacatttatatactagaaataaggagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agataatgcatatatatcatgtgtatagacatacatttatatactagaaataaggagata 214

                                                                       
Query: 301 aaatacatacataggggttgtcgaggagcctcagtgggtaagagagtttacgatgcaaac 360
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 213 aaatacatacataggggttgtcgaggagcctcggtgagtaagagagtttacgatgcaaac 154

                                                                       
Query: 361 atgaggacctgtgttcatggatgtaaaatgttatgttttaccactcatgcaggaaagtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atgaggacctgtgttcatggatgtaaaatgttatgttttaccactcatgcaggaaagtcc 94

                                                                       
Query: 421 gttgctctagaaggcagagacagaaaatcattaggctctactggcttagcatagcactgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  gttgctctagaaggcagagacagaaaatcattaggctctactggcttagcatagcactgg 34

                                            
Query: 481 gtagacttggagacactgtatcaaagtaagtag 513
           |||||||||||||||||||||||||||||||||
Sbjct: 33  gtagacttggagacactgtatcaaagtaagtag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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