BAC Information

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BAC

Clone NameMSMg01-300D02
Chromosome1 (Build37)
Map Location 80,933,810 - 81,108,025
singlet/doubletdoublet
Overlap gene9430031J16Rik
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream geneEG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300D02.T7 (MSMg01no300_d02.b1)MSMg01-300D02.TJ (MSMg01no300_d02.g1)
ACCAG426748AG426749
length733729
length of high quality
(start - end)
234 (132 - 365)185 (135 - 319)
definitionCHROMAT_FILE: MSMg01no300_d02.b1 PHD_FILE: MSMg01no300_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:18 2005CHROMAT_FILE: MSMg01no300_d02.g1 PHD_FILE: MSMg01no300_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,107,796 - 81,108,025)(80,933,810 - 80,933,994)
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAACAGCCACTTCTTGACTTATCATATTCCAAAATCTACTAGAA
TAGCATGAAAAAATAGGCTTATTTCTCCCTAATTCTATGTGGGAAGGCCA
GTGTCACCTTGACTACAGGCAGTTGTAAATTCCTAAGTAGATTTCAAGAT
TTCTTATGCTGTAGTGAGGAGCAGACTAACAGCTTCTAACAGGTCTCTCA
ACAGCTGCAACCCTTGTGCCTTCCAGCATCTTCACTAAGATTCTCATTGC
TTCAGGAGCATCCCCTACAATCCTGCAGATCTTGTCGCTTTCTCTGTGAC
TGTTCTGTGCACACAATGTTTTGTTTGACCCCACGCCCTGATGTTCGTAA
ATCTTTTTATTAAAATGGATTTATCTGAGGTTCTACAATTAGAGACATGT
GCTGTTCCCCGTTTTTCTCTTCACAGTCACCGCTATGCCCTATAAATCCT
AATATTGGGAAAATTCTGGTGGATAAAACAGCTTTTGCTTTCACCTGTCA
TATGTCCCACTATGATAACTCATTAATAATATATTCATAGCCTTCTTCTC
TATGCACCTTTAGGTATGTATGAAATTCATTGCCGAATTTGCATTTTGTA
TTCCCCGAGGGATGTCTCCGATGGATCCCAGGATAATTTTGAGAGTTAAT
AGAGTATATGACTTTTTTAATACTATGAATCTT
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTGTGCTTATGAACATACAAATAC
AGCTTTGTGAAGTCCTGTTTTTTCCCCATATGTGGTACTACAGGGAAATC
TTTGTCCTAAGCAGCTGAAGTTTGTTTTCACAGAATCACTTATTTCAAAA
TTAAAAGAAACTTGCTCTATAATGATCAGTCTCTATATTCGTTACTTTGA
TTGTAGTGATGACTTCTGGATGTACATACACACCAATTAGATCCATTGGC
TTTATATACTATGGACAGTTTTATTATTCTATATACTATAAAGATGTTAA
AAACTAAAATGAGTTAAATTCCTTCCAAAACCATACCCCCTTAAAATCAA
ACTATTTTTAGAATTTACCAGTCTCATATATATGATTAAAACATCCCTCG
TTAGTGGATAAAATATTTACTGACAATTCCTCATGCGAAATTGTGCCATC
TCTTCCTGGGGACATCACTTATGCCTTATCGAGGATAGGTCCCTTGCTTA
TTCTAACCTGGTGTTATGAAGGCCAGATTCTTCTTCAGTGATTCTCTTTT
CTTAGTATTAGAATGGCATCCTATCTTGGTTTGCATGTGCACTGTGTCCA
CATCCATGGCCTTTTAACTTCCTCATGCCGCGATTTTTTTTACCGCCCCC
TCATTCGTTTTGTATCCCCCCCTTGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_d02.b1 MSMg01no300_d02.b1 CHROMAT_FILE:
MSMg01no300_d02.b1 PHD_FILE: MSMg01no300_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:18 2005
         (234 letters)



>mm_chr1_81107592_81108225
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tatgtgggaaggccagtgtcaccttgactacaggcagttgtaaattcctaagtagatttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tatgtgggaaggccagtgtcaccttgactacaggcagttgtaaattcctaagtagatttc 375

                                                                       
Query: 65  aagatttcttatgctgtagtgaggagcagactaacagcttctaacaggtctctcaacagc 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaggtttcttatgctgtagtgaggagcagactaacagcttctaacaggtctctcaacagc 315

                                                                       
Query: 125 tgcaacccttgtgccttccagcatcttcactaagattctcattgcttcaggagcatcccc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 314 tgcaacccttgtgccttccagcatcttcactaagattctcattgcttcagaagcatcccc 255

                                                             
Query: 185 tacaatcctgcagatcttgtcgctttctctgtgactgttctgtgcacaca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacaatcctgcagatcttgtcgctttctctgtgactgttctgtgcacaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no300_d02.g1 MSMg01no300_d02.g1 CHROMAT_FILE:
MSMg01no300_d02.g1 PHD_FILE: MSMg01no300_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:18 2005
         (185 letters)



>mm_chr1_80933610_80934194
          Length = 585

 Score =  350 bits (181), Expect = e-101
 Identities = 184/185 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtactacagggaaatctttgtcctaagcagctgaagtttgttttcacagaatcacttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gtactacagggaaatctttgtcctaagcagctgaagtttgttttcacggaatcacttatt 260

                                                                       
Query: 61  tcaaaattaaaagaaacttgctctataatgatcagtctctatattcgttactttgattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaattaaaagaaacttgctctataatgatcagtctctatattcgttactttgattgt 320

                                                                       
Query: 121 agtgatgacttctggatgtacatacacaccaattagatccattggctttatatactatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgatgacttctggatgtacatacacaccaattagatccattggctttatatactatgg 380

                
Query: 181 acagt 185
           |||||
Sbjct: 381 acagt 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)