Query= MSMg01no301_b12.b1 MSMg01no301_b12.b1 CHROMAT_FILE:
MSMg01no301_b12.b1 PHD_FILE: MSMg01no301_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:24 2005
(643 letters)
>mm_chr1_81710706_81711748
Length = 1043
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%)
Strand = Plus / Minus
Query: 4 ggaattctttataaattcggctacctatacataaataaatgagaattttctgaataaagc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ggaattctttataaattgggctacctatacataaataaatgagaattttctgaataaagc 784
Query: 64 ctaacctatgaattgtcttaaacttcaaaatgtgaaaaggaaagaaaaatggtgtaagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctaacctatgaattgtcttaaacttcaaaatgtgaaaaggaaagaaaaatggtgtaagaa 724
Query: 124 taacaataaaattaagtatttaaaaggagaaacactatttaatagaccatagagagaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 taacaataaaattaagtatttaaaaggagaaacactatttaatagaccatagagagaata 664
Query: 184 acttaggaaaattttgcaattgtcataaaaatttattgcttacaaaaatatataagtaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acttaggaaaattttgcaattgtcataaaaatttattgcttacaaaaatatataagtaaa 604
Query: 244 aagaatatctagtaggcagacatacaatgttcccatgggtatgagcagcatctgctgtga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aagaatatctagtaggcagacatacaatgttcccatgggtatgagcagcatctgctgtga 544
Query: 304 tgatgaactcgaatgggctgtaggctgcaggaattaatcccagggaaaacaatgaaacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgatgaactcgaatgggctgtaggctgcaggaattaatcccagggaaaacaatgaaacta 484
Query: 364 actcataggatgcatgggtcaggcaaaaataacaaataggataatctaagttttgaagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 actcataggatgcatgggtcaggcaaaaataacaaataggataatctaagttttgaagaa 424
Query: 424 gtgtattgtttgcgtgtgaagggcctcagtgtgttatagccaggttcacaagaaaagagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtgtattgtttgcgtgtgaagggcctcagtgtgttatagccaggttcacaagaaaagagc 364
Query: 484 aacagcctcacagggaggagctggggaagagttttgagttacacttctacccttgcatgt 543
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacggcctcacagggaggagctggggaagagttttgagttacacttctacccttgcatgt 304
Query: 544 actatctttacacaatcatactctccacattggctatgaacagtgtcaaggcagcccaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 actatctttacacaatcatactctccacattggctatgaacagtgtcaaggcagcccaag 244
Query: 604 ccaccatggactgtgtgtttactgttagggaggggtctga 643
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 243 ccaccatggactgtgtgtttactgttaggcaggggtctga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_b12.g1 MSMg01no301_b12.g1 CHROMAT_FILE:
MSMg01no301_b12.g1 PHD_FILE: MSMg01no301_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:24 2005
(663 letters)
>mm_chr1_81660763_81661825
Length = 1063
Score = 1189 bits (615), Expect = 0.0
Identities = 643/663 (96%), Gaps = 17/663 (2%)
Strand = Plus / Plus
Query: 1 aatttgaacagaatcttataagagggaaactctatatcaatgagcctatctaatggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgaacagaatcttataagagggaaactctatatcaatgagcctatctaatggaatt 260
Query: 61 cagtaaaccaacccccagagaaatgcaaagaaaaaccacaagccgatattgctgcagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtaaaccaacccccagagaaatgcaaagaaaaaccacaagccgatattgctgcagacc 320
Query: 121 actacatggctgatgctcacaggctgtgccagtgaggctgtgaggcaaccagcaatctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actacatggctgatgctcacaggctgtgccagtgaggctgtgaggcaaccagcaatctca 380
Query: 181 tcagtgattacagggcaagcaaagaagcatgtattagcatgggagcagcaagtccactcc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgattacagggcaagcaaagcagcatgtattagcatgggagcagcaagtccactcc 440
Query: 241 tagccagttcaacatatctgaaaacctatccttttgtagaaaatctctatgtaaaccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagccagttcaacatatctgaaaacctatccttttgtagaaaatctctatgtaaaccttt 500
Query: 301 gcaatattaattatgagcccaaaccaaaagcaaatgaaatgcccatcagcggatgaacgg 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaatattagttatgagcccaaaccaaaagcaaatgaaatgcccatcagcggatgaacgg 560
Query: 361 atgaaaaaatgtggcaacgctttacttcagaatgctactcagaaataaaaaggtagagca 420
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaaaaaatgtggcaacgctttacttcagaatgctactcagaaat-------------- 606
Query: 421 ttaccttaaggagtgagaatggacttttaattctactaagtgcaaataaagtacaactga 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ---ccttaaggagtgagaatggacttttaattctactaagtgcaaataaagtacaactga 663
Query: 481 tcaattattataactggtcaacatattgtgtagctacacagaagcacctggagttatgca 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 664 tcaattattataactggtcaacatattgtgtggctacacagaagcacctggagttatgca 723
Query: 541 tgtgaatgatagctagaattgggatttgttgctacagagtacaaatcaatgactgcatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tgtgaatgatagctagaattgggatttgttgctacagagtacaaatcaatgactgcatga 783
Query: 601 tactatgattaatggtctattagatcacactacaaagatttgtgaaaaatatgttttgag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tactatgattaatggtctattagatcacactacaaagatttgtgaaaaatatgttttgag 843
Query: 661 taa 663
|||
Sbjct: 844 taa 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
