Query= MSMg01no301_j03.b1 MSMg01no301_j03.b1 CHROMAT_FILE:
MSMg01no301_j03.b1 PHD_FILE: MSMg01no301_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
(709 letters)
>mm_chr1_63543848_63544956
Length = 1109
Score = 816 bits (422), Expect = 0.0
Identities = 457/471 (97%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 239 gcaagccaggtgaggcaagccagtaaagaacatccctccatggcctctgcatcagctcct 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 gcaagccaggggaggcaagccagtaaagaacatccctccatggcctctgcatcagctcct 1050
Query: 299 gctccctgacctgcttgagttccagtcctgacttcctttgccgatgaaccgcagtatgga 358
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1049 gctccctgacctgcttgagttccagtcctgacttcctttggtgatgaacagcagtatgga 990
Query: 359 agtgtaagctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgct 418
||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 989 agtgtaagccgaataaaccctttcctccccaactag----atggtcatgatgtttgtgca 934
Query: 419 ggaatanaaaccctgactaagacagatagctttattgaagaagcctgcctattcttagga 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ggaatagaaaccctgactaagacagatagctttattgaagaagcctgcctattcttagga 874
Query: 479 gatatagtaaggatgatagaaaaacaagtggtttgtctagtgtcttggtaagaaatcctg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gatatagtaaggatgatagaaaaacaagtggtttgtctagtgtcttggtaagaaatcctg 814
Query: 539 gtggtattgagaggcacatgggaatttaagtctggtatgtttgggaactctaaactttat 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 813 gtggtattgagaggcacatgggattttaagtctggtatgtttgggaactctaaactttat 754
Query: 599 ctcttcttttgattgagatgggggaaaagtaggctcttgcctaggccctcctggaaagtg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctcttcttttgattgagatgggggaaaagtaggctcttgcctaggccctcctggaaagtg 694
Query: 659 tgacaatccctgcctctgcctgctaagtactaaagctacatggtaagctac 709
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgacaatccctgcctctgcctgctaagtactaaagctacatggtaagctac 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no301_j03.g1 MSMg01no301_j03.g1 CHROMAT_FILE:
MSMg01no301_j03.g1 PHD_FILE: MSMg01no301_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:00 2005
(679 letters)
>mm_chr1_63529511_63530594
Length = 1084
Score = 1207 bits (624), Expect = 0.0
Identities = 668/686 (97%), Gaps = 9/686 (1%)
Strand = Plus / Plus
Query: 1 tcactatgtaccaatgttcaaacattctaggctgttaatcaggcaggagccttattctag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tcactatgtaccaatgttcaaacattctaggctgttaatcaggcaggagccttattctgg 260
Query: 61 ggagagtcttgacagtcctcagggaatgctgtgcttgggtgaaaactgtaaaactcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagagtcttgacagtcctcagggaatgctgtgcttgggtgaaaactgtaaaactcagtg 320
Query: 121 atcggtggctgtaacctaaaggtgtggacctgcagatgtggaatgtggggactaagaggg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atcggtggctgtaacctaaaggtgtggacctgcagatgtggaatgtggagactaagaggg 380
Query: 181 ttgctttattagtaaccaagtgagctgagagaagggactcaggatggactaggtggggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttattagtaaccaagtgagctgagagaagggactcaggatggactaggtggggca 440
Query: 241 gtgctgaaagctgtagttacttgcaggcactggagaagcgagtctgtgggatcagagtag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctgaaagctgtagttacttgcaggcactggagaagcgagtctgtgggatcagagtag 500
Query: 301 cacacaaaccccgtggtagcattctcctgtgtatagggcaca--actttagctggctctc 358
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 501 cacacgaaccccgtggtagcattctcctgtgtatagg--acaggactttagctggctttc 558
Query: 359 atagtctccttctcctgggggggg--atgcttctctgggggtggggtacgctgtgtgggt 416
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 559 atagtctccttctcctggggggggggatgcttctctgggggtggggtacactgtgtgggt 618
Query: 417 acgtcatgagaagatgtgcaggagtatggtgcaaggtgacagtgtgaggacagattcaga 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acgtcatgagaagatgtgcaggagtatggtgcaaggtgacagtgtgaggacagattcagg 678
Query: 477 tgactttagggcctcaaggtctctgtgtggatggcagtggccccagtgatgagttaagta 536
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 tgactttagggcctcaaggtctctgcgtggatggcagtggccccagtgatgagttaagta 738
Query: 537 ggaaaaaaagagcaggattt---aaaaaaaaagtgttactataatctatccagggaggtg 593
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 739 ggaaaaaaagagcaggattttaaaaaaaaaaagtgttactataatctatccaggaaggta 798
Query: 594 gttccagatttagaagagttctttgaattttctgggactcaggggtgtttacatgaacag 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gttccagatttagaagagttctttgaattttctgggactcaggggtgtttacatgaacag 858
Query: 654 ctagagaacgccgatttacagcagca 679
||||||||||||||||||||||||||
Sbjct: 859 ctagagaacgccgatttacagcagca 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1084
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1074
Effective search space: 718506
Effective search space used: 718506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
