Query= MSMg01no301_l10.b1 MSMg01no301_l10.b1 CHROMAT_FILE:
MSMg01no301_l10.b1 PHD_FILE: MSMg01no301_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:10 2005
(371 letters)
>mm_chr1_146898224_146898994
Length = 771
Score = 683 bits (353), Expect = 0.0
Identities = 362/365 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatagaatgccactacaattttctcaaaggagtaaagaagatcttcagatcaga 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggaattcatagaatgtaactacaattttctcaaaggagtaaagaagatcttcagatcaga 509
Query: 64 agaagaatcaaaggggtattttgaatgtctgctgaaggagaacttaaagtcttggaacag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agaagaatcaaaggggtattttgaatgtctgctgaaggagaacttaaagtcttggaacag 449
Query: 124 tgtgtatggtacacttcaatggtatggaaaatcacgatgcatagggaaatcacctgcagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgtgtatggtacacttcaatggtatggaaaatcacgatgcatagggaaatcacctgcagc 389
Query: 184 acacagagctttttgaacaaggtgggtaggtaggaaactcatgtgaagtggatccctctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acacagagctttttgaacaaggtgggtaggtaggaaactcatgtgaagtggatccctctt 329
Query: 244 caacaggagaatgataaaagctacagataaacatttgatgatgcatacaaggcagtaact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caacaggagaatgataaaagctacagataaacatttgatgatgcatacaaggcagtaact 269
Query: 304 aaaaggatagaattcaatttaataagaaaatttaagagctgtataagattcattaaactt 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaaggatagaattcgatttaataagaaaatttaagagctgtataagattcattaaactt 209
Query: 364 ttcaa 368
|||||
Sbjct: 208 ttcaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_l10.g1 MSMg01no301_l10.g1 CHROMAT_FILE:
MSMg01no301_l10.g1 PHD_FILE: MSMg01no301_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:11 2005
(576 letters)
>mm_chr1_146697962_146698937
Length = 976
Score = 1071 bits (554), Expect = 0.0
Identities = 570/580 (98%), Gaps = 9/580 (1%)
Strand = Plus / Plus
Query: 1 agcctagtaacagtggataaataaacaatacaccctcccacacacatactcttaactcag 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctagtaacagtggataaatatacaatacaccctcccacacacatactcttaactcag 260
Query: 61 ggtcattgcagaagaggaagcagaaagattatgaatcagaaaaagagggagttcttaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcattgcagaagaggaagcagaaagattatgaatcagaaaaagagggagttcttaaaa 320
Query: 121 gaatatcaaagttatactcataaagtctcaccaatatcactgaacaaggatgacaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatatcaaagttatactcataaagtctcaccaatatcactgaacaaggatgacaataga 380
Query: 181 aatgccaacacatataaggaaaggcccaggaaacgtcaaccttttacaaggaaatgtagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgccaacacatataaggaaaggcccaggaaacgtcaaccttttacaaggaaatgtagg 440
Query: 241 ctgctaaggaatatcaataagggatattgaagctatgttccactgtaacttactctataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctaaggaatatcaataagggatattgaagctatgttccactgtaacttactctataa 500
Query: 301 aacagtggttttcggtctatgtctttccctaggagactac----cccccccctgcaaaat 356
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 501 aacagtggttttcggtctatgtctttccctaggagactacatttccc-----tgcaaaat 555
Query: 357 taggacttcatagtaaggaagtaggatggctgcatcgcatcacctggatgtgtccacaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taggacttcatagtaaggaagtaggatggctgcatcgcatcacctggatgtgtccacaaa 615
Query: 417 ctgccttctctcaggcacctttagtaggtcaattatcaggagtagaaagtttattgtgtg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctgccttctctcaggcacctttagtaggtcaattatcaggagtagaaagtttattgtgtg 675
Query: 477 ctttgatactatatgggcatattggcatataaaaaggaaaacaaggcctaagaatttatc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctttgatactatatgggcatattggcatataaaaaggaaaacaaggcctaagaatttatc 735
Query: 537 atttatgcctgttcacagaaagctatcacgacgatcaggt 576
||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atttatgcctgttcacagaaagctatcacgacgatcaggt 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
