ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTTAGCTGTGTTCCCTATTTTTAAATAGAGTTATTTTATTTTCT
GGGGTCTAACTTCCTTCCTTATCTTTTTTGATAACTTTTGGTTGTAAGTC
GATTTTATTAGATATGGCTACTCTAGCCTGTTTCTTGGGACCATTTTCTT
GGAAGATTTTTTTCCAAGTCTTTTACTATGAGGTAGTAGTGTCTGTCTTT
GCCATTTAGGTGGGTATCCTGTATGCAGCAAAATGCTGGGTCCTGTTTAC
ATATCCAGTCTGTTAGTCTACATCTTTTTATTGGGGAATTGAGTCCACTG
ATGTAAAGGGATATTATTTTCCAGCGCCCCACCCGCTTCCTGTTATTTTT
GTTGTGGAATTTATGGTGAAATTATGTTTGTGAGAATATCTTCTTTTGGG
TTTGTTGAAAGAAGATTACTTTCTTGCTTTTTCTAGGGTGTAGTTTTCCT
CCTTGTGTTGGAGTTTTCCATCTATTATCCTTCATAGGGCTGGATTTGGG
GAAAGATATTGTGTAAATTTGGCTTTGTCATGGAATATCTTGGTTTCTCT
ATTTATGGTAATTGAGAGTTTTGCTGGGTATAGTAGCCTGGGCTGGCATT
TGTGTCCTTTCAGGGTCTGTATGACATCTTCCCAGGATTTTCTGGCTTTT
AGAGTCTCTTGAAAAGTCTGGTGTAATTTTGATAGGN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACTGGAATACGGTAGAAGCACTGAGAAGT
GCCATAAAAGGGATAGTGAGATTTCACCCCTTCCTCTTAGCTTCTTAGAT
GCCAACAGGTAAGCAGCTTCCTCCACCAGGCTGACTGCAAACTAAACCCT
CCAATACTGGACCAAAACAAATGCTCCTTTTTTATCAGTTACATTAATGC
AATGCTGACTAATGCTTGCTCTTTCTCCTTAGGTAAGTTCTTATTTGGGG
AGTTAAAAGATACCCTTCTATTTTACAAACATTTGTGATATTTAAATGTC
ACTCATCAGAGGGTCTTTGCCTTTGTAGAGTTTATAATACTTTGATATTC
ATGTTGTGTTGCAGAACTGACTTTGTGTCCATTCAGGAAAGCCGAATATT
TTAAAGATTATCACTGCAAAGCTAAGGAAGATTTGTTTATATAGATATGT
TTTCAGCATTTGACTTTTATTTTTCTATGGAATAATCCAGTGTCTCTCAT
CCCAAATGAAGCAGAATTCTTTGTGTTGACACTGTGAGCATATGTCCCTG
TTTTGCATAATATACTATTTCTATTTTCGCCAGTTATTACATTTTACCCA
GCTGAACGTCAATTTTCTAATTTACCACCCCACATTATTTTTTAGAACGC
AGGCTAACTATGAAATAGGGCCCAATAAGTAAACCGAAAT

Query= MSMg01no302_b05.g1 MSMg01no302_b05.g1 CHROMAT_FILE:
MSMg01no302_b05.g1 PHD_FILE: MSMg01no302_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:38 2005
         (469 letters)



>mm_chr1_12530366_12531235
          Length = 870

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactggaatacggtagaagcactgagaagtgccataaaagggatagtgagatttcacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactggaatacggtagaagcactgagaagtgccataaaagggatagtgagatttcacccc 260

                                                                       
Query: 61  ttcctcttagcttcttagatgccaacaggtaagcagcttcctccaccaggctgactgcaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 261 ttcctcttagcttcttagatgccaacaggtaagcagcttcttccaccaggctgaccgcaa 320

                                                                       
Query: 121 actaaaccctccaatactggaccaaaacaaatgctcc-ttttttatcagttacattaatg 179
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 321 actaaaccctccaatactggaccaaaacaaatgctcctttttttatcagttacattgatg 380

                                                                       
Query: 180 caatgctgactaatgcttgctctttctccttaggtaagttcttatttggggagttaaaag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgctgactaatgcttgctctttctccttaggtaagttcttatttggggagttaaaag 440

                                                                       
Query: 240 atacccttctattttacaaacatttgtgatatttaaatgtcactcatcagagggtctttg 299
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 atgcccttctattttacaaacatttgtgatatttaaatgtcactcatcaaagggtctttg 500

                                                                       
Query: 300 cctttgtagagtttataatactttgatattcatgttgtgttgcagaactgactttgtgtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttgtagagtttataatactttgatattcatgttgtgttgcagaactgactttgtgtc 560

                                                                       
Query: 360 cattcaggaaagccgaatattttaaagattatcactgcaaagctaaggaagatttgttta 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattcaggaaagctgaatattttaaagattatcactgcaaagctaaggaagatttgttta 620

                                                             
Query: 420 tatagatatgttttcagcatttgacttttatttttctatggaataatcca 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagatatgttttcagcatttgacttttatttttctatggaataatcca 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)