TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTGATACCGTGGTTGCCTGGCATGCATGAAGCCCTGAATT
TTAATCCAAATACCATTGATTAACCCATGTATGATAGTGTACATCAATAA
TCTCAATAATCAGGATGAAAAGTTAAGAGAATCAGAAGTGGACAGACAAC
TTTGCCCAAGTGGGAATACATGAGACCCAGTTTCAAAGAAAAATTTCTTC
AGAGAGGAAAAGACTTGAGAGGGAAACCTAGATCCTTTTAAAATGCTTAA
GAATGAATATTTAAATGACCATGATATCTGCACATGAATAAAATATGGAA
TTTTATGTGGCTTATTCTGTCTTTTATCTGACATAAAAGGATAGAGTCAG
ATTAGGTACACCACAGAGACAAAGCTGAAACATGTACCCTTATGATTATG
CAGTACAGTACTATGCAATGGAAGAGAGAAAGAAAAGTATTGGTTCAACT
CTATGTCACCCAGTAGTTAGCCATATTGAGAAATGAATTGCATAATTTTA
AGTTGTTCCATCTGTCATTCCATGTGTTTACAGTAAAGTTTATTGCACAA
CTTGGAATACAGTGTTTGTTCAGTCATTGCTGTCCTCTGGGCTTTCTCTT
GGATCTTCACCTACTGCCAGAATCAGTAGGTACATTATGTTTTATCTGAT
TATTGAATCTAGAGGTTATCATAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGAAGAGATGGCAAGTTGCCTCC
ATGAGCAAGACAACTTTTTGCTCAAACCTGAGAACTTGAGTTTTATCTTG
GAACATGCAGTGAGAGAAGGGAAGGGTTTCACAGTTTTGCCTGACTTCTA
TACATGCATTGTAGCAAACACATGCCTGTACTAAGTCTGCTCACACATGA
TAGAAATAAAGTAATAAATCAATGACACATACATGTAGTTACTTACTGTA
GTCCACATACTAATCAGACACTTTGCACTGAGCTCTAATACAAACCCTGT
ATGCTTTTAGCTTCTTTTTTCCACACCCCACCCCTTCCTTCCCAAAGAAA
TGCATAAAAAACTTGAAACACAAAAGAAAACATAGCACAGGTACAAAATA
CGTATTAGGCATCTCACTGGAAGGAGTCTATGTGAAACAAGATCAAGGAT
GGCTTTTAGCAAGAGGATGGGCCACAGTCTTTTTCCCACAATCACCATTG
TCTTAGGGTTTTATTGCTGTAAAGAGATATAATGATCAAGGCAACGCTTT
CAAAGGACAATGTTTAATTGGTGTTGGCTAAAGTTTCAGGTGTTCATTTC
CACTATCATCATCTTGGGGAAGCAAAGCAGTTGTGCAAACATTAACTCCC
AGCAGAAGAAGTTAGGAAGTTGTTAATCTTT

Query= MSMg01no302_e12.b1 MSMg01no302_e12.b1 CHROMAT_FILE:
MSMg01no302_e12.b1 PHD_FILE: MSMg01no302_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:53 2005
         (488 letters)



>mm_chr1_104414531_104415418
          Length = 888

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtatgatagtgtacatcaataatctcaataatcaggatgaaaagttaagagaatcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atgtatgatagtgtacatcaataatctcaataatcaggatgaaaagttaagagaatcaga 629

                                                                       
Query: 61  agtggacagacaactttgcccaagtgggaatacatgagacccagtttcaaagaaaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agtggacagacaactttgcccaagtgggaatacatgagacccagtttcaaagaaaaattt 569

                                                                       
Query: 121 cttcagagaggaaaagacttgagagggaaacctagatccttttaaaatgcttaagaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttcagagaggaaaagacttgagagggaaacctagatccttttaaaatgcttaagaatga 509

                                                                       
Query: 181 atatttaaatgaccatgatatctgcacatgaataaaatatggaattttatgtggcttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 508 atatttaaatgaccatgatatctgcacatgaataaaatatggaattttatgtggcttata 449

                                                                       
Query: 241 ctgtcttttatctgacataaaaggatagagtcagattaggtacaccacagagacaaagct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgtcttttatctgaaataaaaggatagagtcagattaggtacaccacagagacaaagct 389

                                                                       
Query: 301 gaaacatgtacccttatgattatgcagtacagtactatgcaatggaagagagaaagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 388 gaaacatgtacccttatgattatgcagtacagtactatgcaatggaagagagaaagacaa 329

                                                                       
Query: 361 gtattggttcaactctatgtcacccagtagttagccatattgagaaatgaattgcataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtattggttcaactctatgtcacccagtagttagccatattgagaaatgaattgcataat 269

                                                                       
Query: 421 tttaagttgttccatctgtcattccatgtgtttacagtaaagtttattgcacaacttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttaagttgttccatctgtcattccatgtgtttacagtaaagtttattgcacaacttgga 209

                   
Query: 481 atacagtg 488
           ||||||||
Sbjct: 208 atacagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_e12.g1 MSMg01no302_e12.g1 CHROMAT_FILE:
MSMg01no302_e12.g1 PHD_FILE: MSMg01no302_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:53 2005
         (285 letters)



>mm_chr1_104241845_104242529
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaagagatggcaagttgcctccatgagcaagacaactttttgctcaaacctgagaac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 attgaagagatggcaagttgcctccatgaccaagacaactttttgctcaaacctgagaac 260

                                                                       
Query: 61  ttgagttttatcttggaacatgcagtgagagaagggaagggtttcacagttttgcctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagttttatcttggaacatgcagtgagagaagggaagggtttcacagttttgcctgac 320

                                                                       
Query: 121 ttctatacatgcattgtagcaaacacatgcctgtactaagtctgctcacacatgatagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctatacatgcattgtagcaaacacatgcctgtactaagtctgctcacacatgatagaa 380

                                                                       
Query: 181 ataaagtaataaatcaatgacacatacatgtagttacttactgtagtccacatactaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaagtaataaatcaatgacacatacatgtagttacttactgtagtccacatactaatc 440

                                                        
Query: 241 agacactttgcactgagctctaatacaaaccctgtatgcttttag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacactttgcactgagctctaatacaaaccctgtatgcttttag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)