Query= MSMg01no302_f02.b1 MSMg01no302_f02.b1 CHROMAT_FILE:
MSMg01no302_f02.b1 PHD_FILE: MSMg01no302_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:56 2005
(697 letters)
>mm_chr1_13356714_13357815
Length = 1102
Score = 1241 bits (642), Expect = 0.0
Identities = 682/698 (97%), Gaps = 5/698 (0%)
Strand = Plus / Plus
Query: 5 gaattccacaaatatcctagcacaagtcagatgactgaatatattatcagccttcttttg 64
|||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattccacaaatagcatagcagaagtcagatgacggaatatattatcagccttcttttg 264
Query: 65 ggtctatggtatctcagcagagtcatccgctctacatggaatgcacaacactcaccaaaa 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ggtctatggtatctcagcagagtcatccgctctacatggagtgcacaacactcaccaaaa 324
Query: 125 ggcaccacacaacctgtgtccgacagttaaacagacaacattaaatctatattgaagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcaccacacaacctgtgtccgacagttaaacagacaacattaaatctatattgaagaaa 384
Query: 185 taagaagccacatatgtacgtcaactccttgtcttttccaaatctgtatcccggaaagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagaagccacatatgtacgtcaactccttgtcttttccaaatctgtatcccggaaagtg 444
Query: 245 ttccctaggtacattttctactgatcccccacaaacaaattttccatacagagaacaaca 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccctgggtacattttctactgatcccccacaaacaaattttccatacagagaacaaca 504
Query: 305 gacgagagtatgcttttcacagaataaatggattgatgttgtctt-----aacaaaggct 359
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 gacaagagtatgcttttcacagaataaatggattgatgttgtcttgtcttaacaaaggct 564
Query: 360 gacgcaagagcctaacagtcagccaataggaaccccagctcagcaggccagaagcctggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacgcaagagcctaacagtcagccaataggaaccccagctcagcaggccagaagcctggg 624
Query: 420 tttctaatgtgcttcagtagcccaactgtgtgagcctggaagttatctgatccctgtgtg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttctaatgtgcttcagtagcccaactgtgtgagcctggaagttatctgatccctgtgtg 684
Query: 480 tccatttccttcctgagcagccaaaggaggatgctacaactgcttcacacatctaagtga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccatttccttcctgagcagccaaaggaggatgctacaactgcttcacacatctaagtga 744
Query: 540 aaaacccaagtgcataacaaatgtcccccaccccagacacatttagtaaactccatcaag 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 aaaacccaagtgcataacaaatgtccctcaccccagacacatttagtaaactccatcaag 804
Query: 600 tttacttcactgcttgtcctgcttcttgacatttaaaggtaaggggatcttgaaatttca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttacttcactgcttgtcctgcttcttgacatttaaaggtaaggggatcttgaaatttca 864
Query: 660 agaatagttgaggtctgcgttgtatatgacttacagga 697
|||||||||||||| || ||||||||||||||||||||
Sbjct: 865 agaatagttgaggtatgtgttgtatatgacttacagga 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1102
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1092
Effective search space: 750204
Effective search space used: 750204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_f02.g1 MSMg01no302_f02.g1 CHROMAT_FILE:
MSMg01no302_f02.g1 PHD_FILE: MSMg01no302_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:56 2005
(650 letters)
>mm_chr1_13408713_13409762
Length = 1050
Score = 1098 bits (568), Expect = 0.0
Identities = 628/652 (96%), Gaps = 11/652 (1%)
Strand = Plus / Minus
Query: 1 ttctaagtcaagaaatttttgtcttgtctaactgaaggtttttttcaccttaattattag 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 890 ttctaagtcaagaaatttttgtcttgtctaactgaagg-ttttttcaacttaattattag 832
Query: 61 ctcaggaagaagcgcttcaaaaatag-tatttgaaaagttgatacacacaagaggcacag 119
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 831 ctcaggaagaagcgcttcaaaaat-gctatttgaaaagttgatacacacaagaggcacag 773
Query: 120 ccattttcatttccactgaggttagaaccaaggtcaaaatggagtttgggatgtattgct 179
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 772 ccattttcatttccactgaggttagaaccaaggtcaaaatggagtttcagatgtattgct 713
Query: 180 ggagggatttgtgtgtgtattcgtccaaagtaggccgaagaggctgaggaaggctaatgt 239
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 712 ggagggatttgtgtgtgtattcgtccaaagtaggcctaagaggctgaagaaggctaatgt 653
Query: 240 tctcttccactctggaaatagacttccaagtgaatagaattcactttctgtgaatgcatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 652 tctcttccactctggaaatagacttccaagtgaatagaattcactttctgtgaatgcgtg 593
Query: 300 ccaaagactagtgtgtgtcagtatagaaggggcttggaagcactagcaggtcctgtgcag 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 592 ccaaagactagtgtgtgtcagtatggaaggggcttggaagcactagcaggtcctgtgcag 533
Query: 360 agccacatgccatgtatggcattgggtcagacagaggccgagcaccagcatggctcataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agccacatgccatgtatggcattgggtcagacagaggccgagcaccagcatggctcataa 473
Query: 420 ggtcccagatgagatgtggtaccatttcccaggcggcaaggagctgtgctaccgagtaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggtcccagatgagatgtggtaccatttcccaggcggcaaggagctgtgctaccgagtaga 413
Query: 480 taagcagaggctctcctggcagttggcagtatcctcattgtaggatgctgaacacaaggc 539
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 412 taagcagaggctctcc-------tggcagtatcttcattgtaggatgctgaacacaaggc 360
Query: 540 ataccgggcctcaaaggcaacccagataggtagacagcaggcttcccgacac-aaagggc 598
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 359 ataccaggcctcaaagacaacccagataggtagacagcaggcttcccgacacaaaagggc 300
Query: 599 ctggaaaccaaatgacagtgaccccataaacaggtaatccggtctcgcttca 650
|||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 299 ctggaaaccaaatgacagtggccccataaacaggtaacccagtctcgcttca 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
