BAC Information

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BAC

Clone NameMSMg01-302H13
Chromosome1 (Build37)
Map Location 116,644,736 - 116,645,042
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302H13.T7 (MSMg01no302_h13.b1)MSMg01-302H13.TJ (MSMg01no302_h13.g1)
ACCAG428350AG428351
length724725
length of high quality
(start - end)
316 (46 - 361)577 (77 - 653)
definitionCHROMAT_FILE: MSMg01no302_h13.b1 PHD_FILE: MSMg01no302_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:07 2005CHROMAT_FILE: MSMg01no302_h13.g1 PHD_FILE: MSMg01no302_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATGCTGTGCTCCTAGTTGGTATACATAATCCATTCATCATCAT
ATGATCATATATCCAAATAATCACACAGCTCATTTGCTAGTTTCATCATA
AAATTTCCATGCAACATTTCCTGTGATGTTCATTCAGATTGCACGGGGTT
CATCCTTCAGTGAATATATAAGAAACATATATACAAAGAATAGTTACACA
AAATATAATCTTAATATTTTCCTAGACTTTTTCTCTCTGATTTTTTTTTT
TTTTTACATAAAAAGCAAGTGAGTGTGAAAACCCTACAAGTATAAATTTG
GGAAAGAATGTTTTTTTATGCCCCCCCCCCCCCATGAGTAAATTAGTAAT
ATTGGATCAATCTTTCTTTTTATGTGCAAAAAAAGAAAACGGGGGCGAAA
GCAAAAAAATAAAATAAAATAAAAACAAAAGCAAGGGATATTCTTCCTCT
CCTCAGTGAGTCATTGGTTTAGAAAAGCCCTATTGATCACATACTGTTTC
AAACAGATAATGGAAAAGAGAAATTATTGGCTTCATGTTACCAACTAAGT
ACTGAGAGTCATGATAGAAAAAAATTGTATTAATTTCACTTTTGATGCAA
TTCAAGATTGAGTTGCAATAAAAAGTAGCATCCATAGTACAAATGGATAC
TTCTGACATATGGAGGAACTATGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCT
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATTCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCATAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGTAAGGATATGGAGAAAGAGGA
ACACTGCTCCATTGTTGGTGGGATTGCAAGCTTGTACAATCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAAGATC
CCGCAATACCTCTTCTGGGCATATAGCCAGAAGATGTCCCAACCGATAAG
AAGGACACATGCTCTACTATTTTCATAGCAGCCTTATTTATAATATCCAG
AAGCTGGAAAGAACCCAGATGCCCCGCAACAGAGGAATAGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTAGTCAGCTATTAAAAAGAATGGA
TTTATTAAATTCCTAGGCAAATGCATGGACCGGGAAGGTATCATCCTGAG
TGCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGG
ATACACATCTTGTCATATGATCAAATGGTTTCGCGAATAAACTATAATCA
GACAACAAGATGTGCGAACTCGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_h13.b1 MSMg01no302_h13.b1 CHROMAT_FILE:
MSMg01no302_h13.b1 PHD_FILE: MSMg01no302_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:07 2005
         (316 letters)



>mm_chr1_116644532_116645243
          Length = 712

 Score =  543 bits (281), Expect = e-159
 Identities = 302/311 (97%), Gaps = 4/311 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatgctgtgctcctagttggtatacataatccattcatcatcatatgatcata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatgctgtgctcctagttggtatacataatccattcatcatcatatgatcata 264

                                                                       
Query: 65  tatccaaataatcacacagctcatttgctagtttcatcataaaatttccatgcaacattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 tatccaaataatcacacagctcatttgctagtttcatcataaaatttccatgcgacattt 324

                                                                       
Query: 125 cctgtgatgttcattcagattgcacggggttcatccttcagtgaatatataagaaacata 184
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 325 cctgtgatgttcattcagattgcatggggttcatccttcagttaatatataagaaacata 384

                                                                       
Query: 185 tatacaaagaatagttacacaaaatataatcttaatattttcctagactttttctctctg 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tatacaaagaatagttacacaaaataaaatcttaatattttcctagactttttctctctg 444

                                                                       
Query: 245 atttttttttttttttacataaaaagcaagtgagtgtgaaaaccctacaagtataaattt 304
           | ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttttttttt----acataaaaagcaagtgagtgtgaaaaccctacaagtataaattt 500

                      
Query: 305 gggaaagaatg 315
           |||||||||||
Sbjct: 501 gggaaagaatg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 712
Length adjustment: 9
Effective length of query: 307
Effective length of database: 703
Effective search space:   215821
Effective search space used:   215821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)