BAC Information

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BAC

Clone NameMSMg01-302I12
Chromosome1 (Build37)
Map Location 178,896,780 - 178,897,027
singlet/doubletsinglet
Overlap geneSdccag8
Upstream genePld5, B020018G12Rik, Cep170, LOC666235
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302I12.T7 (MSMg01no302_i12.b1)MSMg01-302I12.TJ (MSMg01no302_i12.g1)
ACCAG428395
length735813
length of high quality
(start - end)
---249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no302_i12.b1 PHD_FILE: MSMg01no302_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:11 2005CHROMAT_FILE: MSMg01no302_i12.g1 PHD_FILE: MSMg01no302_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCCTCTGCTAGTCCCTCACAAGAAT
GGGGTTTACTTCCAGAGAATGACCAGGGCCTTTCCAAGAATATGGTGGAA
AGCAAAATGATGTCTACAGGAGATGGGACCTCCCCCAGCTTGTGGTCCTA
GTCACTGACGGAGGTGGAGAAGCAGCCACCTGCCTGTGGTACAGTGACAA
ATATGAAAGCACAGGCTCTTGGGAGGTGGGGGGTAGGAAGGAGTCCTGAT
TCAAAGTTTCACATTTCTGTGTTTTTTTTACTTCTATCACTGTCAATTTT
AAACTATATTTTTAATGCTTCCCCCATCGACCCCCCTAAAGATTTATTAC
TAAACCAGTATACTTTGCCCCCTCCCACAAAAAAAAAAACAAAATAAGGT
GGGGGTGTGTGCCCAGTTTCCACCATATTGTCCAAATTGAGAGCTTTTAT
GGAACGGTTCTCAATATATTCTCAATGTAATGCTAATTTTAAGTCAAATG
CTTAATCTTATTTCCATTCTTTTTTTACTAACTCTCTGCAGTTCTTTTGA
TGGGTGTTATTCACCCATTATGTGCTAACTGTTTGTTTCGCCGTCTTTCC
ACCCTCTATATATTTTACAACTCATTATAGATTTTGAACTAGGTGATCTT
TTTACTCCCCTTTTTATCAATACTCTTATACTTGTTTACTCTGCGTTCTT
ATTTTTCTCGTATTCTCATCTCTCTCTTATATTTTCTTCCTTCTCTCTCT
TATGTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_i12.g1 MSMg01no302_i12.g1 CHROMAT_FILE:
MSMg01no302_i12.g1 PHD_FILE: MSMg01no302_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:11 2005
         (249 letters)



>mm_chr1_178896580_178897228
          Length = 649

 Score =  433 bits (224), Expect = e-126
 Identities = 242/248 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctctgctagtccctcacaagaatggggtttacttccagagaatgaccagggccttt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 448 cttcctatgctagtccctcacaagaatggggtttacttccagagaatgagcagggccttt 389

                                                                       
Query: 61  ccaagaatatggtggaaagcaaaatgatgtctacaggagatgggacctcccccagcttgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 388 ccaagaatatggtggaaagcaaaatgatgtctacaggagatgggacctcctccagcctgt 329

                                                                       
Query: 121 ggtcctagtcactgacggaggtggagaagcagccacctgcctgtggtacagtgacaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggtcctagtcactgacggaggtggagaagcagccacctgcctgtggtacagtgacaaata 269

                                                                       
Query: 181 tgaaagcacaggctcttgggaggtggggggtaggaaggagtcctgattcaaagtttcaca 240
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 268 tgaaagcacaggctcttgggaggtggggggtgggaaggagtcctgattcaaagtttcata 209

                   
Query: 241 tttctgtg 248
           ||||||||
Sbjct: 208 tttctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)