BAC Information

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BAC

Clone NameMSMg01-302K19
Chromosome1 (Build37)
Map Location 106,033,469 - 106,033,785
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302K19.T7 (MSMg01no302_k19.b1)MSMg01-302K19.TJ (MSMg01no302_k19.g1)
ACCAG428497AG428498
length722718
length of high quality
(start - end)
320 (42 - 361)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no302_k19.b1 PHD_FILE: MSMg01no302_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:22 2005CHROMAT_FILE: MSMg01no302_k19.g1 PHD_FILE: MSMg01no302_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTTTTACTGTTTGACATTGACCTTAATGTTGATGGCTATCAGCCTTGA
AGCATACCATAGACCTGTGAAAACTGACATTTTATGAACAAATTTATTGT
TTGTTGATTGGCTATTTCGTTTATTACAAATATACCACATAGTTGCTCAT
TTTTTGTCTTTTTGTCTAAAGTAAAATGCAGTAAGTCCCTGCTTACAGCT
CTGCCTGAACACTGCCATGATGATCTACAAGGCAGCTTCCATCTCTCATT
TCAATATGTGAGAGCACCATTTGCATTTTAGGTGAAAAATTGCTTGCAGC
ATGAAGTTTCCTAAAACAAACTACACAATGTGATAGCCATGCTGTTAGGG
CATTCCTGCTGTCTAGCAAACAGCAGAGTTTAAAATCAATTGGATTATAT
AAAATGCATTTTTCGGCTTCAGCTCATGTTTCTCTTTTACACAATAAGTC
AGGAAATTGAAAGCAACTTGGATCTGAATCATAACCAGAAATCACAAATT
GTCAAAGTCTCAAATAAATGACATTCTTATCATTTAAGATGTAACATGCC
AGAAGTTTCTTAGTGTCACAGGTGTTGCAGTTAAACAAATGCACAGGANA
AGCTTCTTGTATTTCCCCAGGACAAAAACTAGATATTAGATACAAGGAAG
TATCTTTAACAAGAACATTAGT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGTTTCTCCATCTATGGTAATTGATGTT
ACTTGACCTTTCTCCCTTACTGCTTTTAATATTCTCTCTTTATTTAGTGC
ATTTGTTGTTCTGATTATTATGTGTCTGGAGGAATTTCTTTTCTGGTCCA
GTCTACTTGGTGTTCTGTAGGCTTCTTGTATGATCATGGGCATCTCTTTC
TTTGGGTTTGGGAAGTTTTCTTCTATTATTTTGTTGAAGATATTTGCTGG
CCCTTTAAGTTGAAAATCTTCATTCTCATCAACTCCTATTATCTGTAGGT
TTGGTTTTTTCTCTGCCCCCCGCCCTCTTCCTGGATGTTTTGAGTTAGGA
TCCTTTTGCATTTTGTATTTTCATAAACTGTTGTGTCGATGATCTCTATG
AATCTTCTGCACCTGAGATTCTCTCTTCCATCTCTTGTATTCTGTTGCTG
ATGCTCGCATCTATGGTTCCATATTTCTTTCCTAGGGTTTCTATCTCCAG
CGTTGCCTCACTTTGGGTTTTCTTTATTGTGTCTACTTCCCTTTTTAGGT
CTAGTATGGTTTTGTTCATTTCCATCACCTGTTTGGATGTTCTTTCCTGT
TTTTCTTTAAGGACTTCTTACCTGTTTGGTTGCGTTTTCCTGTCTTTCTT
TAAGGAATTGCAATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_k19.b1 MSMg01no302_k19.b1 CHROMAT_FILE:
MSMg01no302_k19.b1 PHD_FILE: MSMg01no302_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:22 2005
         (320 letters)



>mm_chr1_106033265_106033985
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttttactgtttgacattgaccttaatgttgatggctatcagccttgaagcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttttactgtttgacattgaccttaatgttgatggctatcagccttgaagcat 264

                                                                       
Query: 65  accatagacctgtgaaaactgacattttatgaacaaatttattgtttgttgattggctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accatagacctgtgaaaactgacattttatgaacaaatttattgtttgttgattggctat 324

                                                                       
Query: 125 ttcgtttattacaaatataccacatagttgctcatttttt-gtctttttgtctaaagtaa 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 ttcgtttattacaaatataccacatagttgctcatttttttgtctttttgtctaaagtaa 384

                                                                       
Query: 184 aatgcagtaagtccctgcttacagctctgcctgaacactgccatgatgatctacaaggca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgcagtaagtccctgcttacagctctgcctgaacactgccatgatgatctacaaggca 444

                                                                       
Query: 244 gcttccatctctcatttcaatatgtgagagcaccatttgcattttaggtgaaaaattgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttccatctctcatttcaatatgtgagagcaccatttgcattttaggtgaaaaattgct 504

                            
Query: 304 tgcagcatgaagtttcc 320
           |||||||||||||||||
Sbjct: 505 tgcagcatgaagtttcc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)