BAC Information

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BAC

Clone NameMSMg01-302L05
Chromosome1 (Build37)
Map Location 149,175,913 - 149,211,918
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302L05.T7 (MSMg01no302_l05.b1)MSMg01-302L05.TJ (MSMg01no302_l05.g1)
ACCAG428517AG428518
length740734
length of high quality
(start - end)		323 (41 - 363)585 (69 - 653)
definitionCHROMAT_FILE: MSMg01no302_l05.b1 PHD_FILE: MSMg01no302_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:24 2005CHROMAT_FILE: MSMg01no302_l05.g1 PHD_FILE: MSMg01no302_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,175,913 - 149,176,231)(149,211,334 - 149,211,918)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTAGTTTTCCCAATTCTTTTTAAAAACTGTACTATCATATCTATATTGT
GTTATTCAAGAGAATGCATGCTAATACAACTTCAGAAAAAGATGATTAGC
AATACACTATTATCTAGCTTGACAAGTAGATAAAAACAATTTCATGAAAA
TGGCTCAGAATTAATATAGGAGACATATGTTTTGATTTATTATAAATATT
ATATTTTGATTGAATAATATGCCATTGTATTTTTAAAATATTCTTCAATT
ACTTAATTAATTTATTTAAATTCCTGATGCAGATTCCCTTTCCTCTTCTC
CTCCCAGTTCTTCTTGTTATTTGCCCCCTCCCCCACCATCTACCACTACT
CCCTTTCTCTACAGAAAAGAGTAGGTCTCAAAAAAAATTTCTACCAGTGT
GGGGATATTAAGCTGAACTAAGGCTAAGTGCATCTTCTCCTATTGAGGGT
AGATAAGACAAGGCAGTAGGAGGAAAGAATTGATAAATAGGATCTCATGG
AACTGGAAGGCTTCTTTCTGTAAGGCAAGGGGCATAGTCAGAAAGACAAA
TCTGCAGCTTTACAGATTAGGAAAAAATCTTCACTAACCTCACATCCCAT
AGAGGGCTAACATGCAAATATATAAAGAACTCAAGAAGCTAATCACCAAA
ACAAACAACCCAATCAAAAATGGGGTATAGACCTAAACAG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCATATAAAGTGCTGGACTTCAAATAGCCTG
GTAAGTGTAAGGCCTGGACTTAGTTCATCTTGTCTTGCCTGTAAGCAGGA
GACATGATTTTTTCATGTTAGCTACACTATATGATGTTTATGGAGGATGA
TGAATGTTGGCATTCTTTTTGCACTACTACTTCATCTTTTTCTTTTATTG
TCCTAAAATCACACACTGTAATCCTGCATATGATTTCCTTTGCTTTTATA
AAAGTACTTTTCTGTGTTGACAGCAGCTCAAATTGTAATTTTTCTAAAGA
CTTCAGTGCTAAAAAAGTCTTATAATGTTTCCTATAAATTCTACTTCTTT
TATATTTTGGAGAAACTTCCTGTGTAAGACAGAACAAAAATCTCTTTAGA
TCTTCAAAGAGTGAAGAATATTTATGAGCCATAGTGTATTAAAGTTAGTT
AGTTAGTTAGCTAGTTAGTTAGTTAGTTAATTTGGCATTGGGCTCAGGGG
CTATTGTTTCTGCATTCTTCTTATGTGTTTTACCATTGAGTTACACCCCT
TAGCACCATCTTGGTATTTTACATGTCATTTTTCTTGTGTTAATAATCCT
GTACAACTTCATCAGAAAAAAATCTAGCCCAGGGCAACAAGAACAGGTTT
AAATAATTTATATTAAATGAGCCTTGAAACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_l05.b1 MSMg01no302_l05.b1 CHROMAT_FILE:
MSMg01no302_l05.b1 PHD_FILE: MSMg01no302_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:24 2005
         (323 letters)



>mm_chr1_149175709_149176431
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagttttcccaattctttttaaaaactgtactatcatatctatattgtgtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagttttcccaattctttttaaaaactgtactatcatatctatattgtgtta 264

                                                                       
Query: 65  ttcaagagaatgcatgctaatacaacttcagaaaaagatgattagcaatacactattatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcaagagaatgcatgctaatacaacttcagaaaaagatgattagcaatacactattatc 324

                                                                       
Query: 125 tagcttgacaagtagataaaaacaatttcatgaaaatggctcagaattaatataggagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagcttgacaagtagataaaaacaatttcatgaaaatggctcagaattaatataggagac 384

                                                                       
Query: 185 atatgttttgatttattataaatattatattttgattgaataatatgccattgtattttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatgttttgatttattataaatattatattttgattgaataatatgccattgtattttt 444

                                                                       
Query: 245 aaaatattcttcaattacttaattaatttatttaaattcctgatgcagattccctttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaatattcttcaattacttaattaatttatttaaattcctgatgcagattccctttcct 504

                              
Query: 305 cttctcctcccagttcttc 323
           |||||||||||||||||||
Sbjct: 505 cttctcctcccagttcttc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_l05.g1 MSMg01no302_l05.g1 CHROMAT_FILE:
MSMg01no302_l05.g1 PHD_FILE: MSMg01no302_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:24 2005
         (585 letters)



>mm_chr1_149210990_149211974
          Length = 985

 Score = 1100 bits (569), Expect = 0.0
 Identities = 581/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatataaagtgctggacttcaaatagcctggtaagtgtaaggcctggacttagttcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 929 tgcatataaagtgctggacttcaaatagcctggtaagtgtaaggcctgcacttagttcat 870

                                                                       
Query: 61  cttgtcttgcctgtaagcaggagacatgattttttcatgttagctacactatatgatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cttgtcttgcctgtaagcaggagacatgattttttcatgttagctacactatatgatgtt 810

                                                                       
Query: 121 tatggaggatgatgaatgttggcattctttttgcactactacttcatctttttcttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tatggaggatgatgaatgttggcattctttttgcactactacttcatctttttcttttat 750

                                                                       
Query: 181 tgtcctaaaatcacacactgtaatcctgcatatgatttcctttgcttttataaaagtact 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 749 tgtcctaaaatcacacactgtaatcctgcatgtgatttcctttgcttttataaaagtact 690

                                                                       
Query: 241 tttctgtgttgacagcagctcaaattgtaatttttctaaagacttcagtgctaaaaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tttctgtgttgacagcagctcaaattgtaatttttctaaagacttcagtgctaaaaaagt 630

                                                                       
Query: 301 cttataatgtttcctataaattctacttcttttatattttggagaaacttcctgtgtaag 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cttacaatgtttcctataaattctacttcttttatattttggagaaacttcctgtgtaag 570

                                                                       
Query: 361 acagaacaaaaatctctttagatcttcaaagagtgaagaatatttatgagccatagtgta 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acagaacaaaaatctctttggatcttcaaagagtgaagaatatttatgagccatagtgta 510

                                                                       
Query: 421 ttaaagttagttagttagttagctagttagttagttagttaatttggcattgggctcagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttaaagttagttagttagttagctagttagttagttagttaatttggcattgggctcagg 450

                                                                       
Query: 481 ggctattgtttctgcattcttcttatgtgttttaccattgagttacaccccttagcacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggctattgtttctgcattcttcttatgtgttttaccattgagttacaccccttagcacca 390

                                                        
Query: 541 tcttggtattttacatgtcatttttcttgtgttaataatcctgta 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcttggtattttacatgtcatttttcttgtgttaataatcctgta 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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