ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGCGTCAGATCAAGACTCTGAGACATTCAGCCTTGTGCATTGGAGA
ACTCAGAAATTCTTGGCATTTCTGTTGTGAAACAGCCACTGTTGCACTAT
GTAGTCTATAGCCTGTAAGATATTCTAATAAATTACCATATACATACACA
CGTACATAAATACATACATATGACGAATAAAACTATCAAAACATTCATAC
ATTTAGATATTTTAAATTTATAATTTTAATTGATGAAATATATTTAATAT
ATTTTACTTCAGTGCATTTTTGCACTGTGGAATAGTAAAATGTAGCTAAT
TAATGTGAATTATTTTTGATACCCCCCCCCCCCCGCTTTGAAAATTTTAC
TGGGGCTGAAGGGGTCTGTAACCCGATAAAAAGAACAACAATATGAGCTA
ATCAATATCCCCAGAGCTCACGTCTCTAGCTGCATATGTAGCAGAAGATG
GCCTAGTTGGCCATCAGTGGGAAGAGAGGCCCCTTGGTCTTGTAAACTTT
ATATGCCCCAGTACAGGGTAACACCAGGGTCAAGAAGTGGGAGTGGTTGG
GTAGGGGAGCAGGTCAGGGGGTAGGGTGTTACTGTATCCTTTTTCTTTTA
TTCGTTATGTTTTACCTTTCCCTCCCTTTTTTATACTTTTATTTACACTA
TTCTACCATTTTTTTTTTCCGATTCTTTCCTTATTTACA

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTATGCTGTAATATCAGCAATATGTAA
TTCTATCTAATTTTATAAAACAAATATTTATATTCTTATTCAAACATTAG
ATTAACATCAGCTTAACTAATTTTAATTTGCTCTTAAGCAAATTAAAACG
TATTACAATAGTTATAAATCTAATGCAGTTTGGAATTACAATTATTTCAA
TTCCAAGAGAAATTCTAGTAAATAATGTTTTTATGGCAGTTTGTCTATTG
CTAAAACTCATAATACTAAAACAAAATGTGGAACATCACACCCACAGACA
CACCCACATGCACACACACACACACACACACACACACACACACACACAGA
GGGAAGGCAAGTCCTCATTACAACCTGAAGTCAGATTGACTAAAACTTTT
TAAATTGAATCAGAACAATACAATGATAGTTTTTATAGCGAAATCTGAAT
TTATCATAGAAAAAAGGGTATGCTTAATGTAGGGATACTATACATTTCAA
GGTATCTCTGAGTCTTCCCTTGCTCTGTTTCTGTCTACACTCCAAGGGCA
CACTGGTATCATATGTATTTGAAAGTATAGTAGCTGGGTTTGGGGTATCA
TACCCTTGTTTTGATTGTCTAGCAGAGGAATGGGAAAATTAAGCTAATAA
CAGAAACCCAGAAGACTGATGGATAGGCTAT

Query= MSMg01no302_l07.g1 MSMg01no302_l07.g1 CHROMAT_FILE:
MSMg01no302_l07.g1 PHD_FILE: MSMg01no302_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:24 2005
         (531 letters)



>mm_chr1_47853894_47854824
          Length = 931

 Score =  870 bits (450), Expect = 0.0
 Identities = 462/468 (98%), Gaps = 4/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatgctgtaatatcagcaatatgtaattctatctaattttataaaacaaatatttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctatgctgtaatatcagcaatatgtaattctatctaattttataaaacaaatatttata 405

                                                                       
Query: 61  ttcttattcaaacattagattaacatcagcttaactaattttaatttgctcttaagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttcttattcaaacattagattaacatcagcttaactaattttaatttgctcttaagcaaa 345

                                                                       
Query: 121 ttaaaacgtattacaatagttataaatctaatgcagtttggaattacaattatttcaatt 180
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 344 ttaaaaagtattacaatagttataaatctaatgcagtatggaattacaattatttcaatt 285

                                                                       
Query: 181 ccaagagaaattctagtaaataatgtttttatggcagtttgtctattgctaaaactcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccaagagaaattctagtaaataatgtttttatggcagtttgtctattgctaaaactcata 225

                                                                       
Query: 241 atactaaaacaaaatgtggaacatcacacccacagacacacccacatgcacacacacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 224 atactaaaacaaaatgtggaacatcacacccacagacacacccacatg----cacacaca 169

                                                                       
Query: 301 cacacacacacacacacacacacacagagggaaggcaagtcctcattacaacctgaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cacacacacacacacacacacacacagagggaaggcaagtcctcattacaacctgaagtc 109

                                                                       
Query: 361 agattgactaaaactttttaaattgaatcagaacaatacaatgatagtttttatagcgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agattgactaaaactttttaaattgaatcagaacaatacaatgatagtttttatagcgaa 49

                                                           
Query: 421 atctgaatttatcatagaaaaaagggtatgcttaatgtagggatacta 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  atctgaatttatcatagaaaaaagggtatgcttaatgtagggatacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)