Query= MSMg01no302_m01.b1 MSMg01no302_m01.b1 CHROMAT_FILE:
MSMg01no302_m01.b1 PHD_FILE: MSMg01no302_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:28 2005
(316 letters)
>mm_chr1_90660169_90660884
Length = 716
Score = 600 bits (310), Expect = e-176
Identities = 310/310 (100%)
Strand = Plus / Plus
Query: 5 gaattctctcctgaaactttcattgctggaagctccctgagcctaaggtagtcacttccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcctgaaactttcattgctggaagctccctgagcctaaggtagtcacttccc 264
Query: 65 attgctcagtggccccgcccaaccctggctcccagccccgcccactgctttcctgttgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgctcagtggccccgcccaaccctggctcccagccccgcccactgctttcctgttgca 324
Query: 125 tgctgttgcctgtcattgactccagggcaggtgcagcagccaactctggggcagctgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctgttgcctgtcattgactccagggcaggtgcagcagccaactctggggcagctgcag 384
Query: 185 aaaaggcctggcagccctccttgctgtggctcttcgtcccctcagagagccacaactgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaggcctggcagccctccttgctgtggctcttcgtcccctcagagagccacaactgtt 444
Query: 245 tggctattctggccaggccagagccccaaagatcccctcagacagtgcccagtatgcaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggctattctggccaggccagagccccaaagatcccctcagacagtgcccagtatgcaga 504
Query: 305 ccgcagactg 314
||||||||||
Sbjct: 505 ccgcagactg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_m01.g1 MSMg01no302_m01.g1 CHROMAT_FILE:
MSMg01no302_m01.g1 PHD_FILE: MSMg01no302_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:28 2005
(286 letters)
>mm_chr1_90846573_90847259
Length = 687
Score = 485 bits (251), Expect = e-141
Identities = 280/297 (94%), Gaps = 14/297 (4%)
Strand = Plus / Minus
Query: 1 ttatcatttactctaaaatactttttgagcagctattatctgtgagggtgtatgcttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 562 ttatcatttactctaaaatactttttgagcagctattatctgtgagggtgtgtgcttggc 503
Query: 61 actgcttcacaggtatgaagctaaagaccatgctcctattgtcacggaacttacagatta 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 actgcttcacaggtatgaagctaaagaccatgctcctattgtcatggaacttacagatta 443
Query: 121 cttgtctacttgtcagctagaaaaataaatcattttcctgatttgg-taggctccatact 179
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 cttgtctacttgtcagctaaaaaaataaatcattttcctgatttgggtaggctccatact 383
Query: 180 ggccacagtaaccctcatattctctcagcctttaagagttctgacttcattagaacattc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggccacagtaaccctcatattctctcagcctttaagagttctgacttcattagaacattc 323
Query: 240 taagaatagtt------------gtgtgcaattctgaaacattgcttctttctcttg 284
||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 taagaat-gttctaatgaagtcagtgtgcaattctgaaacattgcttctttctcttg 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
