Query= MSMg01no303_b08.b1 MSMg01no303_b08.b1 CHROMAT_FILE:
MSMg01no303_b08.b1 PHD_FILE: MSMg01no303_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
(683 letters)
>mm_chr1_80487449_80488531
Length = 1083
Score = 977 bits (505), Expect = 0.0
Identities = 520/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 160 ccagcttacaaactagt-aaaaagaaaaaaatgcacttctccagatgtcatgcattaaat 218
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 1083 ccagcttacaaactagtaaaaaaaaaaaaaatgcacttctccagatgtcacgcattaaat 1024
Query: 219 tatcattcagtagatattcattagtctgccctcattttcataagtgcttttgatattagt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 tatcattcagtagatattcattagtctgccctcattttcataagtgcttttgatattagt 964
Query: 279 attggccatgtgctttgctttggctaatggagtattagtgtatgtgacataaactagaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 attggccatgtgctttgctttggctaatggagtattagtgtatgtgacataaactagaga 904
Query: 339 ttaagtaggcttttgcagatacagttgatctctgacactttgttttcttccttcaaagac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ttaagtaggcttttgcagatacagttgatctctgacactttgttttcttccttcaaagac 844
Query: 399 tatgctttcatttaagtagcctaggaaggatggaggatacatagaacagcatgagatcct 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tatgctttcatttaagtagcctaggaaggatggaggatacatagaacagcatgagatcct 784
Query: 459 agccaaacccaggttcatacagccagaaaccagccaatcttagcatgttgaaagagaaat 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agccaaacccaggttcatacagccagaaaccagccaatcttagcatgttgaaagagaaat 724
Query: 519 aaatacttattgtcatgtacatcagagatgcatgcgggtgtttttccatatagcaccagt 578
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 723 aaatacgtattgtcatgtacatcagagatgcatgcaggtgtttttccatatagcaccagt 664
Query: 579 gaggcaacaattaacaaacatgtagaactccaagagcattctctgatctaatatcacaat 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaggcaacaattaacaaacatgtagaactccaagagcattctctgatctaatatcacaat 604
Query: 639 gttaagtcagtgattctgtaaaggtgctcatgatgattgcccaag 683
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gttaagtcagtgattctgtaaaggtgctcatgatgattgcccaag 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_b08.g1 MSMg01no303_b08.g1 CHROMAT_FILE:
MSMg01no303_b08.g1 PHD_FILE: MSMg01no303_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
(572 letters)
>mm_chr1_80314850_80315824
Length = 975
Score = 1056 bits (546), Expect = 0.0
Identities = 566/574 (98%), Gaps = 3/574 (0%)
Strand = Plus / Plus
Query: 1 gacaaagctacaaggatacttctgaggcactcacaaactagtatgtaaaactccttaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaaagctacaaggatacttctgaggcactcacaaactagtatgtaaaactccttaaat 260
Query: 61 acagaaaacatcaggaatactttttagctgtattgtcattccttaggaaaggagagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaaaacatcaggaatactttttagctgtattgtcattccttaggaaaggagagaata 320
Query: 121 tatctgtgagaaactgatgttttcatgcttactaaaatacggtatttttcttatgggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctgtgagaaactgatgttttcatgcttactaaaatacggtatttttcttatgggaag 380
Query: 181 acacaaagactaatatcccatgttctgctttgtgtgaatttctttggggctcagtttcct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 acacaaagactaatatcccatgttctgctttgtgtgaatttctttggggctcaggttcct 440
Query: 241 agcaggaaatattctagagatagaatacacaaccagtgctagactagagatagtacttgg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagggaatattctagagatagaatacacaaccagtgctagactagagatagtacttgg 500
Query: 301 attatttgcgcctttttttctattttggaaacatttcttaaattaataatcaactacttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatttgcgcctttttttctattttggaaacatttcttaaattaataatcaactacttt 560
Query: 361 ggaaacatttcttaaattaataatcaactactttaataattaaaatagtaattataaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaacatttcttaaattaataatcaactactttaataattaaaatagtaattataaatt 620
Query: 421 ttgtcattgtaatatagttaacaatcaaattaataatagtagtagttctatgtcttctct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtcattgtaatatagttaacaatcaaattaataatagtagtagttctatgtcttctct 680
Query: 481 aca---tcttttcacctacctccattatctgtactgttctaacaaaaacatatcaaagtg 537
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaacatcttttcacctacctccattatctgtactgttctaacaaaaacatatcaaagta 740
Query: 538 ctcattactttcatcacaagaaagtctaagtact 571
||||||||||||||||||| ||||||||||||||
Sbjct: 741 ctcattactttcatcacaaaaaagtctaagtact 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 975
Length adjustment: 10
Effective length of query: 562
Effective length of database: 965
Effective search space: 542330
Effective search space used: 542330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
