Query= MSMg01no303_b14.b1 MSMg01no303_b14.b1 CHROMAT_FILE:
MSMg01no303_b14.b1 PHD_FILE: MSMg01no303_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:55 2005
(693 letters)
>mm_chr1_145643902_145644994
Length = 1093
Score = 619 bits (320), Expect = 0.0
Identities = 332/336 (98%)
Strand = Plus / Minus
Query: 358 cctcgctgtgactttacagtgtacctttttacgattacaagataaacagtacatataacc 417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 742 cctcgctgtgactttacagtgtaccgttttacgattacaagataaacagtacatataacc 683
Query: 418 taccacttcctataactgaatatgtttatataattatttcaaaataacttcatcttgaaa 477
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taccacttcctacaactgaacatgtttatataattatttcaaaataacttcatcttgaaa 623
Query: 478 atcctcaaacaacagtccaaaactacctgaacaaatatttagcaatagtcagcagctcat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atcctcaaacaacagtccaaaactacctgaacaaatatttagcaatagtcagcagctcat 563
Query: 538 ttagggctggtattgtagttcagagattgcctaccatacctgaggccctaagttcaaacc 597
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 562 ttagggctggtattgtagttcagatattgcctaccatacctgaggccctaagttcaaacc 503
Query: 598 cctgcactgccaaaaattaaaatgaaataaaacagaaatccccacttaatggatatcaat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctgcactgccaaaaattaaaatgaaataaaacagaaatccccacttaatggatatcaat 443
Query: 658 gcatttgtcatatcattaaataaaatttctaaaata 693
||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcatttgtcatatcattaaataaaatttctaaaata 407
Score = 323 bits (167), Expect = 3e-92
Identities = 189/199 (94%), Gaps = 7/199 (3%)
Strand = Plus / Minus
Query: 164 ttttttttttaattttttttttaaagatttat---ttattatatgtaagtacactgtagc 220
|||||||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 335 tttttttttt--tttttttttt--agatttatttattattatatgtaagtacactgtagc 280
Query: 221 tgtcttcagacactccagaagagggcgtcagatcttgttacagatggttgtgagccacca 280
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 279 tgtcttcagacacaccagaagagggagtcagatcttgttacagatggttgtgagccacca 220
Query: 281 tgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctcttacccac 340
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 219 tgtggttgctgggatttgaactctggaccttcagaagagcagtcgggtgctcttacccac 160
Query: 341 tgagccatctcaccagccc 359
|||||||||||||||||||
Sbjct: 159 tgagccatctcaccagccc 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_b14.g1 MSMg01no303_b14.g1 CHROMAT_FILE:
MSMg01no303_b14.g1 PHD_FILE: MSMg01no303_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:55 2005
(664 letters)
>mm_chr1_145455371_145456433
Length = 1063
Score = 1247 bits (645), Expect = 0.0
Identities = 660/665 (99%), Gaps = 2/665 (0%)
Strand = Plus / Plus
Query: 1 ataagcttgctttcagtctgtagatcaagctgtatccatgcttcgtaatccaaggcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 200 ataagcttgctttcagtctgtagatcaagctgtatccatgcttcgtaatccaaggtttca 259
Query: 61 gaaaaggaggggttaaatgattcagaatctcaagtgggatttatgctttaccatgtatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaaaaggaggggttaaatgattcagaatctcaagtgggatttatgctttaccatgtatct 319
Query: 121 ggggg-aaaaaatacaataatgggttataatgacaacacaaattttaaatttttaaaaat 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggggggaaaaaatacaataatgggttataatgacaacacaaattttaaatttttaaaaat 379
Query: 180 attacatgtaaatgagggtgacttctataacttaaaaatcactaaaggacaaaatactgt 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 attacatgtaaatgagggtgacttctataacttaaaa-tcactaaaggacaaaatactgt 438
Query: 240 ttttattaaactgaaaacttgagtctgtaacttcggaaaattagtaagcaaaagaaacat 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttattaaactggaaacttgagtctgtaacttcggaaaattagtaagcaaaagaaacat 498
Query: 300 atttctcattaattctataaactaccagcttcctggaagtgcatttgtctttacaaacta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atttctcattaattctataaactaccagcttcctggaagtgcatttgtctttacaaacta 558
Query: 360 tcagttacagctataaagttgcctcatgacttttagaaaactgatacaatccaatatcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcagttacagctataaagttgcctcatgacttttagaaaactgatacaatccaatatcat 618
Query: 420 acaagctatagtttcaggaaacaaaacaaacagcagttgactgcatgatattaattataa 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 acaagctatagtttcaggaaacaaaacaaacagcagttgactccatgatattaattataa 678
Query: 480 ttcactgttcttatttgtaaattacagaacagttgttagaaagaactcaagagctctata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcactgttcttatttgtaaattacagaacagttgttagaaagaactcaagagctctata 738
Query: 540 ctagtaattcacataaatgatagtaattcaaataaatgtaaaagttaaattcctttcacg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctagtaattcacataaatgatagtaattcaaataaatgtaaaagttaaattcctttcacg 798
Query: 600 agctttcagtctgcaaagctcaagggtcacctgactccaggctctctgagcagacagaaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agctttcagtctgcaaagctcaagggtcacctgactccaggctctctgagcagacagaaa 858
Query: 660 atgaa 664
|||||
Sbjct: 859 atgaa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
