XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCT
CTAAATCCATCTGGCCCTGGGCTTTTTTTAGTTGGGAGGTTTTTAATGAC
TTCTATTTCTTGTGTGATATGGGCCTATGTAGATAGTTTATTTGTTCTTG
ATTAACTCTGGTATGTGGCATCAGTCTAGAAAACCATCTATTTTAGATAA
ATTTTTCAGTTTGTTGAGCATAGGCTTTTATACAAGGATCTGATGATGTC
TTGACTTTCAGCCATTTTTGTTGTTATGTCTCCTTTTTCATTTCATTTTT
TCTTTTTTTTTAATATTAAGACAAAAGCATTTATGAATGACAGAAATATT
AGCATTTTCATACCAACCCCCAAAAATCCATAGAATTACATGAGAATTAA
TTCATAATTAACTACTGTTAATATTTAAAATATGATTATTTAAATATTTA
AACTATTTAATATTTTTATTAGCTGTTTTCCTACCTCTTGAAGATATGAG
AGTCCTTTAAGGAGGATATCAGTAACTCACTAAAAGAAATACAGGAAAAC
ACAGGTAAAGAGGGAAAGGAATTGAATAAAGCAATTGATCCAAGACCTAA
AAGTGGACGTGGAAACAAAAAAAACACATGGAGACAAACCTGTAAATAGA
AAACCAAGGAAAGAGGTCAGCAATTACAGATGTAAGTATTACCAACAGAA
TACAAGAGATAGAAGAGAGAATCTCAAGTGTAGAAGATACGGTAGAAGAG
ATTGATACAACTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATATTCATGCCAAAAAAAAAAAACAAACAA
ACAAACAAACAAACAAACAACCGGAAAGAAACATTGCTTGTCAGGTATGT
CAGTACCTGCAAACACAGAGATATTGGAGTCAAGAACATGAGAATCATGT
GAGGAACACTTAGGCTTTTTGACTACCAGATAGTTTAGTTTCAATATGAA
ACTGTGTTACAAGAAAATACAATTGAGTTTAATAAAACAGGATATGTCAC
ATCATCTTCTGGTTTCTATTAAGATATGTAATGGGGCTCAGAACTGAACA
AAAAATTCTCACCCAAGGAATAACGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCT
CAGAAAATTGTACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCAGA
TGCCCCTCCACAGAGGAA

Query= MSMg01no303_c21.b1 MSMg01no303_c21.b1 CHROMAT_FILE:
MSMg01no303_c21.b1 PHD_FILE: MSMg01no303_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:01 2005
         (691 letters)



>mm_chr1_101139943_101141034
          Length = 1092

 Score = 1263 bits (653), Expect = 0.0
 Identities = 680/689 (98%), Gaps = 2/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctctaaatccatctggccctgggc-tttttttagttgggaggtttttaatga 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 gaattctgctctaaatccatctggccctgggcttttttttagttgggaggtttttaatga 263

                                                                       
Query: 64  cttctatttcttgtgtgatatgggcctatgtagatagtttatttgttcttgattaactct 123
           ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 cttttatttcttgtgtgatataggcctatgtagatagtttatttgctcttgattaactct 323

                                                                       
Query: 124 ggtatgtggcatcagtctagaaaaccatctattttagataaatttttcagtttgttgagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 ggtatgtggcatcagtctagaaaaccatctattttagataaatttttcagtttgttgagt 383

                                                                       
Query: 184 ataggcttttatacaaggatctgatgatgtcttgactttcagccatttttgttgttatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataggcttttatacaaggatctgatgatgtcttgactttcagccatttttgttgttatgt 443

                                                                       
Query: 244 ctcctttttcatttcattttttctttttttttaatattaagacaaaagcatttatgaatg 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctttttcatttcattttttctttttttttaatattaagacaaaagcatttatgaatg 503

                                                                       
Query: 304 acagaaatattagcattttcataccaacccc-caaaaatccatagaattacatgagaatt 362
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 acagaaatattagcattttcataccaacccctcaaaaatccatagaattacatgagaatt 563

                                                                       
Query: 363 aattcataattaactactgttaatatttaaaatatgattatttaaatatttaaactattt 422
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattcataattaattactattaatatttaaaatatgattatttaaatatttaaactattt 623

                                                                       
Query: 423 aatatttttattagctgttttcctacctcttgaagatatgagagtcctttaaggaggata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatatttttattagctgttttcctacctcttgaagatatgagagtcctttaaggaggata 683

                                                                       
Query: 483 tcagtaactcactaaaagaaatacaggaaaacacaggtaaagagggaaaggaattgaata 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcagtaactcactaaaagaaatacaggaaaacacaggtaaagagggaaaggaattgaata 743

                                                                       
Query: 543 aagcaattgatccaagacctaaaagtggacgtggaaacaaaaaaaacacatggagacaaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagcaattgatccaagacctaaaagtggacgtggaaacaaaaaaaacacatggagacaaa 803

                                                                       
Query: 603 cctgtaaatagaaaaccaaggaaagaggtcagcaattacagatgtaagtattaccaacag 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctgtaaatagaaaaccaaggaaagaggtcagcaattacagatgtaagtattaccaacag 863

                                        
Query: 663 aatacaagagatagaagagagaatctcaa 691
           |||||||||||||||||||||||||||||
Sbjct: 864 aatacaagagatagaagagagaatctcaa 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space:   736842
Effective search space used:   736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)