BAC Information

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BAC

Clone NameMSMg01-303M09
Chromosome1 (Build37)
Map Location 68,291,859 - 68,292,181
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303M09.T7 (MSMg01no303_m09.b1)MSMg01-303M09.TJ (MSMg01no303_m09.g1)
ACCAG429267AG429268
length773793
length of high quality
(start - end)
323 (123 - 445)339 (70 - 408)
definitionCHROMAT_FILE: MSMg01no303_m09.b1 PHD_FILE: MSMg01no303_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:46 2005CHROMAT_FILE: MSMg01no303_m09.g1 PHD_FILE: MSMg01no303_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGGGTTGCGTTAGTCAGGCAGCCTAACCGAATTGGTGAGAACCAGG
TTATGTGACAGTTTCTGCCCCAAACAGTAAGGTGGAAGATGACAGAGGAA
AAATACTCAAAGATTAAGTGCTGTTCAAATGCAGTTATACATTTTTTTTA
GGAGGACATCCTTTTATTGTTATTTTTATTTTTATTGGATATTTTCTTTA
TTTACATTTCAAATGTTATCACCTTTCCTGGTCCCCCCCTCCCAGAAACC
CCCTATTCCATCATCCCTCCTCCTGCTTCTATGAGGGTGTTTCTCCACTC
ACCTTCCCATTCTCTGCCCTTGATTCCCCTACACCAGGGCATCTATTGAG
CCTTCATAGGACCCCGGACCTCTCCTCCCATTGATGCCTGACAAGGTCAT
CATATGATATATATATATACAGCTGGAGCCAGGTGTACTCTTTGGTTGAT
GGCTTAGTCCCTGGGAGCTTTGGGGGTTCTGGCTGGTTGACATTGTTTTT
CCTCCTATGGGGCCGCTACCCATTTTGAGAATAAAGAGTATTCCATTAAT
TTTCACACCCTACCTTTCTTTTCACCCTATTATTGCAATCCTCCTCTTAA
TGAACCCTATCACCCTCTTTACCTGACTTCTCGGCCGCTTTATCCTCTAA
CATTATATTTGTCTCTCACTATCATTCCGTGAAATGCCTCACTCCCTTCA
TTACGTAGTCGACATAATATGTA
TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTACCAGCGGAATTCCTACCCCATTCAGGGCCTTCAATCCT
TTTCTCAACTCTTCCATAAGGCTCCCCAAACTCTATTGAATGTTTGGCTG
TGGACATCTTCATCTGTTTCAGTCAGCTGCTGGTAAAGCCTCTCAGAGGA
GACACAGTTATGCTAGGGTCCTGTCTGTAAGCATAACAAAGTATTAATAG
TGTCAGGGATTGGTGCTTGCCTGTGGGCTATGTTTCAAGTTGGGCCAGTT
ATTGGTTGTCCATTTCTTCTTTTTCCGTTCCATTCTGTTCTTGCATTTAT
TATAGACAGGACAAATTTTGGGTTGAAAGACAACTTTATTCCTCCACTTT
GGGGGGGGGGGCCCCCCCCCCAATTACTATATATTACTCGTCTATGCTTT
CTGTCCCCATTGTTTTTTTATTTTCTTGTTTTAACTCTCTCCTTTTTTTC
CCTGTCCCCTCCCTTCATCTCTGATTTAAATTTTCTTCTATACACCCCCT
ACCTTAATAACATCCTTTCTTATTTTGTCACCTCTATTTATTATCTTCTT
ATTTCCTGTAGAATCACCACTCCTGTTTTCCCATATTTGTGTTCTCTATT
TTTTTTCTCTCCCTATCTCACTAACTGTCCCTTTTTATCTTACATTTTCN
CCTATTTTCACTTTCAACTTAACGCGTCCTCACACTTTCCCACCCCACAT
TCATTTTTCATTTCATTCTTACACCTTCTTTATCTTTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_m09.b1 MSMg01no303_m09.b1 CHROMAT_FILE:
MSMg01no303_m09.b1 PHD_FILE: MSMg01no303_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:46 2005
         (323 letters)



>mm_chr1_68291659_68292381
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtaaggtggaagatgacagaggaaaaatactcaaagattaagtgctgttcaaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagtaaggtggaagatgacagaggaaaaatactcaaagattaagtgctgttcaaatgc 260

                                                                       
Query: 61  agttatacattttttttaggaggacatccttttattgttatttttatttttattggatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttatacattttttttaggaggacatccttttattgttatttttatttttattggatat 320

                                                                       
Query: 121 tttctttatttacatttcaaatgttatcacctttcctggtccccccctcccagaaacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctttatttacatttcaaatgttatcacctttcctggtccccccctcccagaaacccc 380

                                                                       
Query: 181 ctattccatcatccctcctcctgcttctatgagggtgtttctccactcaccttcccattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctattccatcatccctcctcctgcttctatgagggtgtttctccactcaccttcccactc 440

                                                                       
Query: 241 tctgcccttgattcccctacaccagggcatctattgagccttcataggaccccggacctc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 441 cctgcccttgattcccctacaccagggcatctattgagccttcataggaccaaggacctc 500

                                  
Query: 301 tcctcccattgatgcctgacaag 323
           |||||||||||||||||||||||
Sbjct: 501 tcctcccattgatgcctgacaag 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)