XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTGCCCTTTCAGTTTCTACAAACAACAAAGCCAGGATTTTAGATCCCATT
GTCTCATATATTCTTAATAAACACATATCCATGCCTGAATGATTTCCTAA
GGTATCCCAGCAACCAAAACACTCCTCTCAGTTTCCTAACACTAGATTTG
GAGAATCCATAAATTGAATGATAATGGTTCAGTTCTTTTTATACAAAGCT
CTTCTTTAAAAAAAAAAAAGATATTCAGTCAAGTTCAGGAGCTGTTTAGA
GCACATCTCATAATAGTTGTCCTGTTAGGGCTTAGTATCTGGACACCTTG
GAATAAGCAATTGTAATTCCATTTCTGTTTACATGACCACCTCAGAGGGC
AGGAAGAAAGAATGTAGTATATCGGGATACATAAATGCATCCCAGAAGGT
TCACTGTGAAACGTTTGATTCACAAATACCTGTAATTGTCACTCACAAGG
GGTATGAGAAGATTGTTTGGTGGGCAAAGAACTTGTACAATCAAATCTGA
GGGACCAAGTTAGGATCCTCAGTGACTTGCTAAATTTTGCCATGACAACC
ATCATCAGTAGTCCAGGTGAGAAGTAAGGGGGAGAAGTAAATATTTGGAA
CTCACTGACTGATGAGCTTCAGGCTCATTGTGTCTCTGTCTCAAAAAAAA
AAAAAGGTGGTGGACACTGTTCAAGGGACACACCTGATAT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCGNGACTTCCAGGCTGGTGAGACAGGAGTGGGTGGGTGGATTG
GTGGGGATGCACCCCCACAGAAGCAGAGGGAGCTGATAGGATATTTCTGG
AGGGGAAACCGGGAAAGGAGATAACATTTGAAATGTCAATAAATAAAATA
TCTAAAGAAAAACAAAAAATATTAAAAAGTTAAAAAAAAAAGAATCTTCC
TTGAGTTCTTAAATGATGTCACATTCTTTCTCTGTCTCTCTTTCAGTGTC
TCTGCCTCTCTTGCCTCATTGAANAACCGGAAAGACTCTGNGAGANAGNG
TCTTTGTGTGCGCCCCCGTCTGTGTCTATGTGTGTATTTTTGTATGTGCG
TGAGCACCCCCACATCTGTGAATTTGAATGTGCGCCTTCTGCGAGACCCT
GTGTTTTATACCCTATGATATAATATCTGAACCCCTTTCGCCGTCCCGTT
TTTTACCCATTATCCCCCTGCATGCTCCCTCCCGCTACCGCCTTCTCCCG
AATTCCCCCTAACCCACTCAGACGTATCTTTTTTTTCCTATCCCCGTATC
CCTTCCAGTCCTCTCACTTCCCGCTTTACCACCTTGCCCCCCCTTTTTTC
TTTTTTTTTTTAACCTCCCTTTCCCCTTCCTGACCCAAGTCCTATTTTAC
GCCTTTAACCTCTTACTACTACTTCCTTCGTGTTCCCCTCACGCTTTTCG

Query= MSMg01no303_n19.b1 MSMg01no303_n19.b1 CHROMAT_FILE:
MSMg01no303_n19.b1 PHD_FILE: MSMg01no303_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:53 2005
         (672 letters)



>mm_chr1_101465765_101466843
          Length = 1079

 Score = 1236 bits (639), Expect = 0.0
 Identities = 659/669 (98%), Gaps = 7/669 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgccctttcagtttctacaaacaacaaagccaggattttagatcccattgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgccctttcagtttctacaaacaacaaagccaggattttagatcccattgtc 264

                                                                       
Query: 65  tcatatattcttaataaacacatatccatgcctgaatgatttcctaaggtatcccagcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatatattcttaataaacacatatccatgcctgaatgatttcctaaggtatcccagcaa 324

                                                                       
Query: 125 ccaaaacactcctctcagtttcctaacactagatttggagaatccataaattgaatgata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaaacactcctctcagtttcctaacactagatttggagaatccataaattgaatgata 384

                                                                       
Query: 185 atggttcagttctttttatacaaagctcttctttaaaaaaaaaaaa----gatattcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 385 atggttcagttctttttatacaaagctcttctttaaaaaaaaaaaaaaaagatattcagt 444

                                                                       
Query: 241 caagttcaggagctgtttagagcacatctcataatagttgtcctgttagggcttagtatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagttcaggagctgtttagagcacatctcataatagttgtcctgttagggcttagtatc 504

                                                                       
Query: 301 tggacaccttggaataagcaattgtaattccatttctgtttacatgaccacctcagaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggacaccttggaataagcaattgtaattccatttctgtttacatgaccacctcagaggg 564

                                                                       
Query: 361 caggaagaaagaatgtagtatatcgggatacataaatgcatcccagaaggttcactgtga 420
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 565 caggaagaaagaatgtagtatatcgggaaacataaaagcatcccagaaggttcactgtga 624

                                                                       
Query: 421 aacgtttgattcacaaatacctgtaattgtcactcacaaggggtatgagaagattgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacgtttgattcacaaatacctgtaattgtcactcacaaggggtatgagaagattgtttg 684

                                                                       
Query: 481 gtgggcaaagaacttgt---acaatcaaatctgagggaccaagttaggatcctcagtgac 537
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgggcaaagaacttgttgtacaatcaaatctgagggaccaagttaggatcctcagtgac 744

                                                                       
Query: 538 ttgctaaattttgccatgacaaccatcatcagtagtccaggtgagaagtaagggggagaa 597
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgctaaattttgccatgacagccatcatcagtagtccaggtgagaagtaagggggagaa 804

                                                                       
Query: 598 gtaaatatttggaactcactgactgatgagcttcaggctcattgtgtctctgtctcaaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtaaatatttggaactcactgactgatgagcttcaggctcattgtgtctctgtctcaaaa 864

                    
Query: 658 aaaaaaaaa 666
           |||||||||
Sbjct: 865 aaaaaaaaa 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1079
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1069
Effective search space:   707678
Effective search space used:   707678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)