BAC Information

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BAC

Clone NameMSMg01-304A04
Chromosome1 (Build37)
Map Location 112,908,447 - 112,909,212
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh7, LOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304A04.T7 (MSMg01no304_a04.b1)MSMg01-304A04.TJ (MSMg01no304_a04.g1)
ACCAG429430AG429431
length1,3361,297
length of high quality
(start - end)
765 (86 - 850)677 (83 - 759)
definitionCHROMAT_FILE: MSMg01no304_a04.b1 PHD_FILE: MSMg01no304_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:04 2005CHROMAT_FILE: MSMg01no304_a04.g1 PHD_FILE: MSMg01no304_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCAGTTTNNNNNNNCCAGTGGGCGCTAAGACTCCTATGGGAGAGGAT
CCGCGGAATTCTACCTTTCTGCTTGTGTCTCTTGAATTTCTTTAAGGGAG
TTGTTTACATCCTTTTTAAAGACCTTTCATATCTTCATGAAATATGATTT
TAGGTCAGAATCTTGCTCTTCGGTTGGGTTCCGGCACCCAGGATTTTCTG
TGGTAGGAGAACTGGGTTCTGATTGTACCAAACTGCATTACCTGTGTCCC
TCTGTTAGAGCAGACCTTCTGGGAGACAGACAGCCTATGGGGTTCAGGTC
AGTGTGCAGGCATGTTGGTCTGACATGGGTGCAGATAGAAGTGCAGACCA
GAAGGGCTCAGGTAGAGTAGCATAGATCCCATGTTTGCTGGGCTCTGTGG
GGTTCAAGCTACTAGGTGTATTAGTGTGTCTTTTTCACCTGTGTCCCTGG
TTAGGGAAGACCTCCTGGGAGACAGGAAGGCTTTGGGATCCAGGGGCAGG
CTTGCTGATTTGCCTAGGTCATAGGTGAAAATGTAGACTGGAATGGCAAA
GGGGAGAGTATTAAAATTCTAATAGTCCAGAGTCAACAGTCTAAGAGAAT
TTTGGTTATTGGAGTCTGACATTTTACCAAGACAATTTTAAATAAGAAAA
TTGAGACTTTTCTATCAAAGGTATTAATTTGAAAAGATATTGATATCTCT
TCATGATTTTAAATTCATTCTGAAGATTCTTGATTATTAAAGTACTGAAT
CAGCATATTTATTATTATTTTATCAGAACAGTGATTGATGTTTAAATGGG
CTTCAGTCCTTATTTTATTAGCTTTGACTTANAAAATATTTTATGATCCT
TTTTCAGGAATTCAGACACCAAGCCATGTGGTATGCTATAGCTTCTACTC
CACATGATTCCCTGGTAACATCATCCTCCTAATAGAAATCTTTCCTCTCC
CCCCCCTGGGGACTTTACCCAGAACAATTATACACCAGACCCTCTGTGGG
GGGTTGTTTAAGAAATAAGCGGTTTTCCCCCACAATTTATGCGTCCGGAT
ATATTTCTAATACTCCTTATTAAAAAAATTTCCTTTTCTTTCCCCAAAAA
TGTACCAATTTTTACCAACCAATCTTAAATTTCTCTTTTTGGACGCTCGT
TGATTCTGTATCCATCTATTAATTTATAGTCTTTAATTTTTTTATACCAT
TCTTTCTCTTTTCCTCTTTTTATTTCCACTCAATCTCTTACTTTACTACT
TCNGCATTTCCTTTTTCCTTACGTGTTCTCTNNCTCNTCACCATTTTTTT
TTTCTTATACATGTTCATGTATCTACTTCCGCCTTA
NNNCCATTTCTNNNNNNAATGATGTGAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTCAATTGAAGAAC
AGAAAAAGAAAGCTTGGTACATTCACAAAATTTAGAATTATTCAGTTGAA
ATATATATATATATAATCATTAATTTTTTAGGTAAATGGATACAACTAGA
AAAGGATCATCCTAAGTAGATTATCCAAATCCAGGGGGGAAAATGAAGTA
TGTGTTGGGGGTTTGAGAGTTACCGTGCAACCAAAAATATACCAAATTCA
GTAAAGCAAGAATAGTTTATTGAATGCACACTAAAATACTTAATATACAG
GTCCACAAGAAGTAAAAACTCAATTGTAGTGGCAATCTGTCCTCAGGGCA
AACTTTTTATATGAAAAAACAAGGTCAAAACTTTGAAGGCAAGCAGAAAA
GGGGTACTACATTTTTTACAACTAGACAAAGTATTATCAGCTAACCTTTA
AACTTACTGGTCCTGAGTGAGGTAAGAAGGCAGGTAGAGAGATGGTGAAC
AGAGGGATTTCATAACATTAAAATAACAGGGTATAAGGGATTCATCATAA
CTTTTTAGCTTATTAGTAGCATTTTTTGGTGTCTGGTAACATAATAGCAA
TAAACTAAGTTTCACCTTGTGAGTAAATTGGAGTCTGTTTCCAAAATGGC
TACAGTTATCTTAAAAGGAACAGACCTCAGCTGCATGTATTCATTTATAA
GTGGATGTTAGCCATTAAGTAAATGAAAACCAAGCTAAAGTCTGTACACC
TAGAGAGATTATACAAGGAAGAGGAAGTTTGGATCTTCTTGTAGAAGGGA
AAAAAGAATAAATTTTTTCCCTAAAAAGAGAGCTGTTGTGGCAGGGGCCC
AAAAAGTGAATAACCCCCTGTGAGACAGGATTTATATTGTAGGAAATCGT
ACCAATGAACCAATGGGCCGGGCTGTTTTATGTTATGTGGGAAACCTATG
CCGCGAAACTCCCTACATCTTGATGACCACATTGTGTTTTATTTTTTCCT
TTTNTTTTTACTTCTTTTGTTCTTTCATCTTTTCAAATCATCATCTTCAC
AATTATTTTTCTTATCTTCTTGTTTTTTCATTTGCTTTACTTCTTATTTA
TTCTTAATCGACAATTCTTTNCATAAATTTATACTNTTCTCTNCTTTATA
NTATACNTCTACTATTNTTCTTCNNNCTATAATTNCCTTTATTTCCTATT
TCTCCCTTCTCCCTTCATACACNCTTATCTCACATATTATCCTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_a04.b1 MSMg01no304_a04.b1 CHROMAT_FILE:
MSMg01no304_a04.b1 PHD_FILE: MSMg01no304_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:04 2005
         (765 letters)



>mm_chr1_112908247_112909412
          Length = 1166

 Score = 1384 bits (716), Expect = 0.0
 Identities = 754/767 (98%), Gaps = 3/767 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctttaagggagttgtttacatcctttttaaagacctttcatatcttcatgaaatat 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct: 201 atttctttaagggagttgtttacatcctctttaaagacctttcatatcttgataaaatat 260

                                                                       
Query: 61  gattttaggtcagaatcttgctcttcggttgggttccggcacccaggattttctgtggta 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gattttaggtcagaatcttgctcttcggttgggttccggcatccaggattttctgtggta 320

                                                                       
Query: 121 ggagaactgggttctgattgtaccaaactgcattacctgtgtccctctgttagagcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaactgggttctgattgtaccaaactgcattacctgtgtccctctgttagagcagac 380

                                                                       
Query: 181 cttctgggagacagacagcctatggggttcaggtcagtgtgcaggcatgttggtctgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgggagacagacagcctatggggttcaggtcagtgtgcaggcatgttggtctgaca 440

                                                                       
Query: 241 tgggtgcagatagaagtgcagaccagaagggctcaggtagagtagcatagatcccatgtt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtgcagatagaagtacagaccagaagggctcaggtagagtagcatagatcccatgtt 500

                                                                       
Query: 301 tgctgggctctgtggggttcaagctactaggtgtattagtgtgtctttttcacctgtgtc 360
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 501 tgctgggctctgtggggttcaagctactatgtgtattggtgtgtctttttcacctgtgtc 560

                                                                       
Query: 361 cctggttagggaagacctcctgggagacaggaaggctttgggatccaggggcaggcttgc 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 cctggttagggaagacctcctgggagaaaggaaggctttgggatccaggggcaggcttgc 620

                                                                       
Query: 421 tgatttgcctaggtcataggtgaaaatgtagactggaatggcaaaggggagagtattaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatttgcctaggtcataggtgaaaatgtagactggaatggcaaaggggagagtattaaa 680

                                                                       
Query: 481 attctaatagtccagagtcaacagtctaagagaattttggttattggagtctgacatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attctaatagtccagagtcaacagtctaagagaattttggttattggagtctgacatttt 740

                                                                       
Query: 541 accaagacaattttaaataagaaaattgagacttttctatcaaa-ggtattaatttgaaa 599
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 accaagacaattttaaataagaaaattgagacttttctatcaaaaggtattaatttgaaa 800

                                                                       
Query: 600 agatattgatatctcttcatgattttaaattcattctgaagattcttgattattaaagta 659
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 801 agatattgatatctcttcatgattttaaattcattctgaagtttcttgattattaaagta 860

                                                                       
Query: 660 ctgaatcagcat-atttattattattttatcagaacagtgattgatgtttaaatgggctt 718
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctgaatcagcatgatt-attattattttatcagaacagtgattgatgtttaaatgggctt 919

                                                          
Query: 719 cagtccttattttattagctttgacttanaaaatattttatgatcct 765
           |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 920 cagtccttattttattagctttgacttagaaaatattttatgatcct 966


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1166
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1156
Effective search space:   872780
Effective search space used:   872780
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)