BAC Information

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BAC

Clone NameMSMg01-304A19
Chromosome1 (Build37)
Map Location 8,264,341 - 8,265,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304A19.T7 (MSMg01no304_a19.b1)MSMg01-304A19.TJ (MSMg01no304_a19.g1)
ACCAG429458AG429459
length1,2571,312
length of high quality
(start - end)		604 (85 - 688)716 (87 - 802)
definitionCHROMAT_FILE: MSMg01no304_a19.b1 PHD_FILE: MSMg01no304_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:10 2005CHROMAT_FILE: MSMg01no304_a19.g1 PHD_FILE: MSMg01no304_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTCCTTTNNNNNACAGTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCTTTGTTCAGCTCTGAGCCCTTTTTTTTAATGGGGTTATTTG
ATTTACTGGAGTCCACCCTCTTGAGTTCTTCATATATATTGGATATTGGC
CCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTTATTGACGGTGACTTTTGCTTTGCAGAAGCTTTGCAATT
TTATGAGGTCCCATTTATCGATTATTTTTTTTTTTGGTGGAGTTTTCCTT
TTTTTTTCCATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA
TACCAAAAGTCGCCCATACCCACCCACCCCCACTCCCCTACCCACCCACT
CCCCCTTTTTTGCCCTGGCGTTACCCTGTACTGGGGCATATAAAGTTTGC
CTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG
ATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTGGTTCATAA
TGTTGTCCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTTCTTT
CTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTG
AGCATCCACTTCTGTGTTTGCTAGGCATAGTCTCACATGAGACAGCTACA
TCTGGGTCCTTTCCATAATATCTTGCTAGTGTATGCAATGGTGTCAGCGT
TTGGATGCTGATTATGGGGTGGATCCCTGCATTTTTTTTTTTCTTAATGG
GCCATCCTTTTCATCTTTGCTTCACACTTTTGTTTCTTGTAATCCCTTCC
TTGGGGGGTTTGTTCCTCCCTTTTTCTTTTATTAAGAAGTCCTAACCTTC
TCCATGCCTCCTCTTCTTTTTTTTGTGTTCTTCCTACATAGAATATTTTT
CTTTCTAAAACCTAATATTATACCGTTCTACTATCCCTTTCCCTCCTTAT
TATAGAAATTAGCATTGTTTTGTTTTTTGCTTCCATTCTTCCTATCTTCT
TCTCCTCCTCCTGTTCTCCTTTAACTTTTACTCTTTCTCATTACTATTAT
CTACATAGCCGTGATCTTTCTAGACTTATACTTTTAATCTTACGTCCTTT
TCATTCNATTTAATCCTCCTACACTTCACATTTCCTGTCTATCATATTTA
CACTCTTTCTCACTTCCTGTGACCGTTATGTTCCTTAAATATTTTTATCA
AATTTTA

NNCCCTTCTTTTNNNNTAGCATGGGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGGGTTTAGACTATGAGAG
TCCTTTCTAGTTTTCATTTCTGTTTTACTTACTTATTTTAAATAAAAATC
AGTCCTCATATAGCAAGCCTGTAGTGCATGAAATTTCATTTTTAGTTACT
TCTTAGGGAATGATCATCAGGGTATCGTTTCTCATGTTATTGTGATTACA
CTGGAGAGAAAGCTATTTCTTGGCTCTCTTTAATGATTAATACAGAGTCC
TCTGTGTTACTCCAGGGAAATCTGCAGAACTGTGGAATATGATGAATATA
ATTAAACAAAATGGTAACTGTGCAGGGGAGTTGTTAAAGTTATTTCACTT
AGTAAAATAAATATATTTGAAGGGAAAATATCCTTTTGCCTGTAAGAAAT
GGAAACTGCTTATTTTTATTTAGATATTAAACTTATGAAAGACTGTGGTC
ACCTTATAAATAAAGATGTAGTTGTTACATAGTCTTGAAATTATGATGCT
GGACAAATTCTGATTACATAAAATGGGCTGCTATGAAGAAAACATGTACA
GTAGCTAAATATTTGCTTTAAAATACAGATGTGCCTTGGCTTGCAAGGAG
GTATGTCTTGAAGTGGTAACCACCTCTCACTAGAGAGTGATTGTTTTCTC
ATGACTGTCTACCAGCGTGATTGTTGCCCCTGTACAGAATCAGAGGGATA
AGATCAGTCCACACATTGCTAACCTGTCAACAGATTAACAGTACACACCA
CAGTTTCTATATCTCCTTTGAACCACTGCGAACCTGGGAAACTATTATTC
CAATTATTACAAGTGGGGGATCTTTGCATTTCTAAAAAAAATCATCCGGG
TATTAATTTTTTCCTTTTGTGGTGGGGGGAATTCTTTTCACCACAAGTTC
CAATATAAACATTTCCCCTATTTCTATGGTAAAAAAACACAAAAAGAAAA
TTTTCGTATCCTTCTGTCGCAAAGAATTTATAAAAAATTGATCTCTCTTT
GACCCCGACGTCAGGCGTTGGCAATAAACAATTATTTTTTCTAATTCACA
AATCTCTACTCATTAGTATCTAACCTTACTACCACTTTACCAACACTTAC
AAAAATAATCACTTATCATCATCTATAATTCTAATTTCATAACCCATTCT
NCCAATTCTCCGCCATCCAATTTATATCATTTATTTTACTACATNACANA
TNTNAATATTTCAATTCAATCATACTCTATTATTACAACTAATCATTTAT
ATTCAATTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_a19.g1 MSMg01no304_a19.g1 CHROMAT_FILE:
MSMg01no304_a19.g1 PHD_FILE: MSMg01no304_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:10 2005
         (716 letters)



>mm_chr1_8264141_8265256
          Length = 1116

 Score = 1292 bits (668), Expect = 0.0
 Identities = 704/716 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagactatgagagtcctttctagttttcatttctgttttacttacttattttaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagactatgagagtcctttctagttttcatttctgttttacttacttattttaaataaa 260

                                                                       
Query: 61  aatcagtcctcatatagcaagcctgtagtgcatgaaatttcatttttagttacttcttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcagtcctcatatagcaagcctgtagtgcatgaaatttcatttttagttacttcttag 320

                                                                       
Query: 121 ggaatgatcatcagggtatcgtttctcatgttattgtgattacactggagagaaagctat 180
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgatcttcagggtattgtttctcatgttattgtgattacactggagagaaagctat 380

                                                                       
Query: 181 ttcttggctctctttaatgattaatacagagtcctctgtgttactccagggaaatctgca 240
            |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gtcttggttctctttaatgattaatacagagtcctttgtgttactccagggaaatctgca 440

                                                                       
Query: 241 gaactgtggaatatgatgaatataattaaacaaaatggtaactgtgcaggggagttgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaactgtggaatatgatgaatataattaaacaaaatggtaactgtgcaggggagttgtta 500

                                                                       
Query: 301 aagttatttcacttagtaaaataaatatatttgaagggaaaatatccttttgcctgtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttatttcacttagtaaaataaatatatttgaagggaaaatatccttttgcctgtaag 560

                                                                       
Query: 361 aaatggaaactgcttatttttatttagatattaaacttatgaaagactgtggtcacctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatggaaactgcttatttttatttagatattaaacttatgaaagactgtggtcacctta 620

                                                                       
Query: 421 taaataaagatgtagttgttacatagtcttgaaattatgatgctggacaaattctgatta 480
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tgaataaagatgtagttgttacatagtcttgaaattatgatgttggacaaattctgatta 680

                                                                       
Query: 481 cataaaatgggctgctatgaagaaaacatgtacagtagctaaatatttgctttaaaatac 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 681 cataaaatgggctgctatgaagaaaacaagtacagtagctaaatatttgctttcaaatac 740

                                                                       
Query: 541 agatgtgccttggcttgcaaggaggtatgtcttgaagtggtaaccacctctcactagaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatgtgccttggcttgcaaggaggtatgtcttgaagtggtaaccacctctcactagaga 800

                                                                       
Query: 601 gtgattgttttctcatgactgtctaccagcgtgattgttgcccctgtacagaatcagagg 660
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 801 gtgattgttttctcatgactgtctaccagagtgagtgttgcccctgtacagaatcagagg 860

                                                                   
Query: 661 gataagatcagtccacacattgctaacctgtcaacagattaacagtacacaccaca 716
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 861 gataagatcagtccacacattgctaacctgtcaacagattaacagtagacaccaca 916


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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