Query= MSMg01no304_e12.b1 MSMg01no304_e12.b1 CHROMAT_FILE:
MSMg01no304_e12.b1 PHD_FILE: MSMg01no304_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:42 2005
(896 letters)
>mm_chr1_139076366_139077666
Length = 1301
Score = 1398 bits (723), Expect = 0.0
Identities = 823/877 (93%), Gaps = 40/877 (4%)
Strand = Plus / Plus
Query: 16 gaattccttctccttctcctttacatttaatttctcttatttctgaccaatctttgctat 75
||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct: 216 gaattccttctccttctcctttagaatgactttctcttatttctgaccaatctttgctat 275
Query: 76 gaagcattctcacagtcttttttaaaagcccaaatggtaatttggagacatgagtgataa 135
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 276 gaagaattctcacagtcttttttaaaagcccaaatggtaatttggagacgtgagtgataa 335
Query: 136 gcgatgttaagtccttcaa-cccaccacagcagctacgtcactaaatccttcactggcct 194
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcgatgttaagtccttcaaccccaccacagcagctacgtcactaaatccttcactggcct 395
Query: 195 tgataggagttgcttccaaggcctggtcttac----tgtggaagaacaggtcttaagtga 250
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 396 tgataggagttgcttccaaggcctggtcttactgcatgtggaagaacaggtcttaagtga 455
Query: 251 tcacttttggagaaaaaaagcaaccgattagaaaataaacatttttttcagaaaggagaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcacttttggagaaaaaaagcaaccgattagaaaataaacatttttttcagaaaggagaa 515
Query: 311 agaaaaggaaaaagaaaaagaaaaggaaaaagaaaaggaaaaggaaaaggaggtcaagct 370
||| ||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 516 agagaag------gaaaaagaaaag------gaataggaaaaggaaaaggaggtcaagct 563
Query: 371 agaacattccagttcaaacccatctctcatctgagtaatgagaacaaatgttctgaccag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaacattccagttcaaacccatctctcatctgagtaatgagaacaaatgttctgaccag 623
Query: 431 tgacactctcagctgggggcataaaaataacttgaaaatagctgggcagtggtgacgtac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgacactctcagctgggggcataaaaataacttgaaaatagctgggcagtggtgacgtac 683
Query: 491 acctttaattccagcgctaaggaggcagaggcaggcagatctctgtgagtttgaggccag 550
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 684 acctctaattccagcgctaaggaggcagaggcaggcagatctcggtgagttcgaggccag 743
Query: 551 cctgaaaaacaaaaaaacaaaaa-ccaa-------caacttggaagtagagactgtctga 602
||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 744 cctgaaaaacaaaaaaacaaaaaaccaaaaaacaacaacttggaagtagagactgtctga 803
Query: 603 gccaaagagataattaagcatttttatttttatttttatttttaaaacaaactcgctgag 662
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 804 gccaaagagataattaagcatttttatttttattttta------aaacaaactcgctgag 857
Query: 663 ctgtttaaattctactatgtaatgtcattggatacttaatttcagaatgtaaatatcatt 722
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 858 ctgtttaaattctactatgtaatgtcattagatacttaatttcagaatgtagatatcatt 917
Query: 723 taaaagagttgctgctaaaaatagcatctatctatctatcgatctatctatctatc---- 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 918 taaaagagttgctgctaaaaatagcatctatctatctatctatctatctatctatctatc 977
Query: 779 ----atctatcattcatatctatcattcatatctatctatctatctatc-atctatctat 833
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 978 tatcatctatcattcatatctatcattcatatctatctatctatctatctatctatctat 1037
Query: 834 ctatctatctatctatctatctatctatctatctatc 870
|||||||||||||||||||||||||||||||||||||
Sbjct: 1038 ctatctatctatctatctatctatctatctatctatc 1074
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 172
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 896
Length of database: 1301
Length adjustment: 11
Effective length of query: 885
Effective length of database: 1290
Effective search space: 1141650
Effective search space used: 1141650
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_e12.g1 MSMg01no304_e12.g1 CHROMAT_FILE:
MSMg01no304_e12.g1 PHD_FILE: MSMg01no304_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:42 2005
(665 letters)
>mm_chr1_139137417_139138483
Length = 1067
Score = 905 bits (468), Expect = 0.0
Identities = 502/514 (97%), Gaps = 4/514 (0%)
Strand = Plus / Minus
Query: 1 gtaaatttccaattcttgaagtttacactgaagtttctacttgcagtgtaaaagaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtaaatttccaattcttgaagtttacactgaagtttctacttgcagtgtaaaagaaaact 454
Query: 61 attggagaagagatgaatactatgaaatagctcaaacaaatgagaaaataataaagagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attggagaagagatgaatactatgaaatagctcaaacaaatgagaaaataataaagagaa 394
Query: 121 gcatgtccaggtttaa--tttttttcttatttaaacagttgtttttcaggataaaattta 178
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gcatgtccaggtttaatttttttttcttatttaaacagttgtttttcaggataaaattta 334
Query: 179 ttttcccaaacaaaactaaataataaataagatgaaaaactattagaacataaaatgctg 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttttcccaaacaaaactagataataaataagatgaaaaactattagaacataaaatgctg 274
Query: 239 aagtactttattctgcaagtggagaagataatgtgcattaaagcctgtcacctgttctta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aagtactttattctgcaagtggagaagataatgtgcattaaagcctgtcacctgttctta 214
Query: 299 gataccagaagtagacacatacctttaatgtcatcacttcagtggacaggcaggaggatc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 213 gataccagaagtagacacatacctttaatgtcatcacttcagtggacaggcagaaagatc 154
Query: 359 tgttttatagtttgaggacacccaccctggtctacatagcaaattcaggtcagccagtgc 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 153 tgttttatagtttgaggacacccaccctgctctacatagcaaattcaggtcagcctgtgc 94
Query: 419 tgccctgtctcaataaacaaataa-ataacaaactaacaaatcggaaaaaaccatttagt 477
|||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||| |
Sbjct: 93 tgccctgtctcaataaacaaataaca-aacaaacaaacaaatgggaaaaaaccatttaat 35
Query: 478 gtgttctctcctctgacctttctgtgggccctga 511
||||||||||||||||||||||||||||||||||
Sbjct: 34 gtgttctctcctctgacctttctgtgggccctga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1067
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1057
Effective search space: 692335
Effective search space used: 692335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
