Query= MSMg01no304_f13.b1 MSMg01no304_f13.b1 CHROMAT_FILE:
MSMg01no304_f13.b1 PHD_FILE: MSMg01no304_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:52 2005
(860 letters)
>mm_chr1_139076367_139077632
Length = 1266
Score = 1382 bits (715), Expect = 0.0
Identities = 815/869 (93%), Gaps = 41/869 (4%)
Strand = Plus / Plus
Query: 15 gaattccttctccttctcc-ttacattgaatttctcttatttctgaccaatctttgctat 73
||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 215 gaattccttctccttctcctttagaatgactttctcttatttctgaccaatctttgctat 274
Query: 74 gaacaattctcacagtcttttttaaaagcccaaatggtaatttggagacatgagtgataa 133
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 gaagaattctcacagtcttttttaaaagcccaaatggtaatttggagacgtgagtgataa 334
Query: 134 gcgatgttaagtccttcaa-cccaccacagcagctacgtcactaaatccttcactggcct 192
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcgatgttaagtccttcaaccccaccacagcagctacgtcactaaatccttcactggcct 394
Query: 193 tgataggagttgcttccaaggcctggtcttac----tgtggaagaacaggtcttaagtga 248
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 395 tgataggagttgcttccaaggcctggtcttactgcatgtggaagaacaggtcttaagtga 454
Query: 249 tcacttttggagaaaaaaagcaaccgattagaaaataaacatttttttcagaaaggagaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcacttttggagaaaaaaagcaaccgattagaaaataaacatttttttcagaaaggagaa 514
Query: 309 agaaaaggaaaaagaaaaagaaaaggaaaaagaaaaggaaaaggaaaaggaggtcaagct 368
||| ||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 515 agagaag------gaaaaagaaaag------gaataggaaaaggaaaaggaggtcaagct 562
Query: 369 agaacattccagttcaaacccatctctcatctgagtaatgagaacaaatgttctgaccag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaacattccagttcaaacccatctctcatctgagtaatgagaacaaatgttctgaccag 622
Query: 429 tgacactctcagctgggggcataaaaataacttgaaaatagctgggcagtggtgacgtac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgacactctcagctgggggcataaaaataacttgaaaatagctgggcagtggtgacgtac 682
Query: 489 acctttaattccagcgctaaggaggcagaggcaggcagatctctgtgagtttgaggccag 548
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 683 acctctaattccagcgctaaggaggcagaggcaggcagatctcggtgagttcgaggccag 742
Query: 549 cctgaaaaacaaaaaaacaaaaa-ccaa-------caacttggaagtagagactgtctga 600
||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 743 cctgaaaaacaaaaaaacaaaaaaccaaaaaacaacaacttggaagtagagactgtctga 802
Query: 601 gccaaagagataattaagcatttttatttttatttttatttttaaaacaaactcgctgag 660
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 803 gccaaagagataattaagcatttttatttttattttta------aaacaaactcgctgag 856
Query: 661 ctgtttaaattctactatgtaatgtcattggatacttaatttcagaatgtaaatatcatt 720
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 857 ctgtttaaattctactatgtaatgtcattagatacttaatttcagaatgtagatatcatt 916
Query: 721 taaaagagttgctgctaaaaatagcatctatctatctatcgatctatctatctatc---- 776
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 917 taaaagagttgctgctaaaaatagcatctatctatctatctatctatctatctatctatc 976
Query: 777 ----atctatcattcatatctatcattcatatctatctatctatctatc-atctatctat 831
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 977 tatcatctatcattcatatctatcattcatatctatctatctatctatctatctatctat 1036
Query: 832 ctatctatctatctatctatctatctatc 860
|||||||||||||||||||||||||||||
Sbjct: 1037 ctatctatctatctatctatctatctatc 1065
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 860
Length of database: 1266
Length adjustment: 10
Effective length of query: 850
Effective length of database: 1256
Effective search space: 1067600
Effective search space used: 1067600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_f13.g1 MSMg01no304_f13.g1 CHROMAT_FILE:
MSMg01no304_f13.g1 PHD_FILE: MSMg01no304_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:52 2005
(687 letters)
>mm_chr1_139137417_139138505
Length = 1089
Score = 909 bits (470), Expect = 0.0
Identities = 504/516 (97%), Gaps = 4/516 (0%)
Strand = Plus / Minus
Query: 1 tagtaaatttccaattcttgaagtttacactgaagtttctacttgcagtgtaaaagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tagtaaatttccaattcttgaagtttacactgaagtttctacttgcagtgtaaaagaaaa 456
Query: 61 ctattggagaagagatgaatactatgaaatagctcaaacaaatgagaaaataataaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctattggagaagagatgaatactatgaaatagctcaaacaaatgagaaaataataaagag 396
Query: 121 aagcatgtccaggtttaa--tttttttcttatttaaacagttgtttttcaggataaaatt 178
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagcatgtccaggtttaatttttttttcttatttaaacagttgtttttcaggataaaatt 336
Query: 179 tattttcccaaacaaaactaaataataaataagatgaaaaactattagaacataaaatgc 238
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tattttcccaaacaaaactagataataaataagatgaaaaactattagaacataaaatgc 276
Query: 239 tgaagtactttattctgcaagtggagaagataatgtgcattaaagcctgtcacctgttct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgaagtactttattctgcaagtggagaagataatgtgcattaaagcctgtcacctgttct 216
Query: 299 tagataccagaagtagacacatacctttaatgtcatcacttcagtggacaggcaggagga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 215 tagataccagaagtagacacatacctttaatgtcatcacttcagtggacaggcagaaaga 156
Query: 359 tctgttttatagtttgaggacacccaccctggtctacatagcaaattcaggtcagccagt 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 155 tctgttttatagtttgaggacacccaccctgctctacatagcaaattcaggtcagcctgt 96
Query: 419 gctgccctgtctcaataaacaaataa-ataacaaactaacaaatcggaaaaaaccattta 477
|||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||
Sbjct: 95 gctgccctgtctcaataaacaaataaca-aacaaacaaacaaatgggaaaaaaccattta 37
Query: 478 gtgtgttctctcctctgacctttctgtgggccctga 513
|||||||||||||||||||||||||||||||||||
Sbjct: 36 atgtgttctctcctctgacctttctgtgggccctga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1089
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1079
Effective search space: 730483
Effective search space used: 730483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
