Query= MSMg01no304_h05.b1 MSMg01no304_h05.b1 CHROMAT_FILE:
MSMg01no304_h05.b1 PHD_FILE: MSMg01no304_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:06 2005
(256 letters)
>mm_chr1_163728800_163729455
Length = 656
Score = 482 bits (249), Expect = e-140
Identities = 254/256 (99%)
Strand = Plus / Minus
Query: 1 acctctgaccacttcctcagtaacccaccaaccttctggtgcccccgcttcactctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acctctgaccacttcctcagtaacccaccaaccttctggtgcccccgcttcactctgtgg 397
Query: 61 aggtggaacccagagagaatcatctgagttagggggaagtgaaacttgttccttacatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aggtggaacccagagagaatcatctgagttagggggaagtgaaacttgttccttacatat 337
Query: 121 ttttattttctgcctcctgttcttttccagcccttctgtgtgagcaagatgttggttaga 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 ttttattttctgcctcctgttcttctccagcccttctgtgtgagcaagatgttggttaga 277
Query: 181 agtttttgaaggagggaaggncacaagatgtgtgcaaggggatggggagatgagcaggga 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agtttttgaaggagggaaggccacaagatgtgtgcaaggggatggggagatgagcaggga 217
Query: 241 tggaagggggagaggg 256
||||||||||||||||
Sbjct: 216 tggaagggggagaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space: 159809
Effective search space used: 159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no304_h05.g1 MSMg01no304_h05.g1 CHROMAT_FILE:
MSMg01no304_h05.g1 PHD_FILE: MSMg01no304_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:06 2005
(663 letters)
>mm_chr1_163568336_163569399
Length = 1064
Score = 1224 bits (633), Expect = 0.0
Identities = 657/667 (98%), Gaps = 7/667 (1%)
Strand = Plus / Plus
Query: 1 tcaagtttctttgtgcaaaccttcctccccctgttaattggtcaataaaaggctaaagcc 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 202 tcaagtttctttgtgcaaaccttcctccccaagttaattggtcaataaaaggctaaagcc 261
Query: 61 tatgattgtgcagtagatagaggtaggtgggttttcagttacctggttggggccatagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgattgtgcagtagatagaggtaggtgggttttcagttacctggttggggccatagga 321
Query: 121 agagaggaaagaggaaggaaaaaagacatggaaggaagaggaggaggccaccatgagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agagaggaaagaggaaggaaaaaagacatggaaggaagaggaggaggccaccatgagagg 381
Query: 181 agatgcaccacaaacacatggccaagagaaacagcaagtaacaaggaacacagagctgcg 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agatgcaccacaatcacatggccaagagaaacagcaagtaacaaggaacacagagctgcg 441
Query: 241 atgcaagttagaattgttccaaaacctgcccaatctaggtttggagcttataaataaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgcaagttagaattgttccaaaacctgcccaatctaggtttggagcttataaataaaat 501
Query: 301 gcctggattgtgtgtctttttttattttattttaacctttttaatttttttacttaaaga 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcctggattgtgtgtctttttt-attttattttaacctttttaatttttttacttaaaga 560
Query: 361 taacaaccacttacttccttttacttctgttgcataaaacttctcagctgggctgattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacaaccacttacttccttttacttctgttgcataaaacttctcagctgggctgattaa 620
Query: 421 gtcatgggcactcatctatagacactaacatacaaggcatcagaactgacctactctagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcatgggcactcatctatagacactaacatacaaggcatcagaactgacctactctagg 680
Query: 481 actgcactgacaatttttttt-cacagttaagtatgttttttattagatattttctttat 539
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 681 actgcactgacaatttttttttcacagttaagtat--tttttattagatattttctttat 738
Query: 540 ttacatttcaaatgttatcccccttcctagtttcccctccaaaaatcccctttgtccccc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttacatttcaaatgttatcccccttcctagtttcccctccaaaaatcccctttgtccccc 798
Query: 600 cccc---actgctccccaacccacccactcccacttcctggccctggcattcccctatac 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cccccccactgctccccaacccacccactcccacttcctggccctggcattcccctatac 858
Query: 657 tgggaca 663
|||||||
Sbjct: 859 tgggaca 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
