BAC Information

Click to search

BAC

Clone NameMSMg01-304M19
Chromosome1 (Build37)
Map Location 150,878,064 - 150,878,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304M19.T7 (MSMg01no304_m19.b1)MSMg01-304M19.TJ (MSMg01no304_m19.g1)
ACCAG429970AG429971
length1,2701,312
length of high quality
(start - end)
376 (422 - 797)703 (86 - 788)
definitionCHROMAT_FILE: MSMg01no304_m19.b1 PHD_FILE: MSMg01no304_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:55 2005CHROMAT_FILE: MSMg01no304_m19.g1 PHD_FILE: MSMg01no304_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAGTCTTTNNNNNNCACATTGGGCGCTNXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACTTTTTCATTCAGTATCTTTTAAGGCAAAAATAA
ACATCATATTTTTTCAAAGGACTCATTAAAAATTTTTGTTCTCTTGATTA
CATGAAATAAACTATTACCTCATATTACTACAAGACTTTTATAAATGCTT
CCAAAATCTAGAAGTATAGATCTTAAGAAGTGTCTTAGTCAGGGTTTCTG
TTCCTGGACAAAAATACCATGACCAAGAAGCAAGTTGGGGAGGAAGGGAT
TTGGCTTATACTTCCATGCTGTTGTTCATCACCAAGGAAGTCTTGACTGG
AACTCAAGCAGGTTAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGAGAT
GCTTCTTACTGACTTTTTCTTTCTACTCTCTTATAGAACCAAGACTACCA
GCCCAGAGATGGTCCCACTCACAAGGGGCCCTCCCCCTTGATCACTAATT
GAGAAATTGCCTTACAGCCAGATCTCATGGAGGCATTTCCCAACTGAAGC
TCCTTTCTCTGTGATAACTCCAGCCTGGGTCAAGTTGACACAAAACTAGC
CAGTACAATTGACCCCTTGTCAACTTGACACACAAACACATCACTAGTAA
GCCTCAACCCTTAGTTTCTTACTCATCCCCAAGATCTAAACAACTTTAAA
GTTCCACAGTCTTTACATATTAAAAGTTCAATCCTTTAAAAATATCCAGT
ATCTTTTAAAATTCAAAGTCTCTTAACTGTGGACTTCATTTAAAAATCTT
CTTTCAAGAGGGAAAATATCAGGGCACAGTCACAATCAAAAGCAAAAATC
AATCTCCCACCCGTGCAATGGCTGGGATCCAACTCCTGATATTTTGGGGC
CCCTCCAAGGATTTGGGTCAATCTCTAACCATGCCCTTTTTAAGAAAAGG
AACGTCCTCTAAGTTTCAAAAGCGGGAATCCCCGGGTGGGGGAATATCAG
TTTCTTTTTAAAGCACTCTACCTTCTAACAAGGGACGGGGTGAATCTTTA
ATAATTAATAAATTCGCCCTCCTCCAAGGATAAACTTAGGTTTTTCTTGG
GTACGAAAGGTGGCTCCTTAAAAAAAACTCACTAAAAGGACTCAACGGTG
GGTGGCTGTCCTAACTCTTCCTACTTCCTTATTCCTCTGACTAAGTAATT
ACCCCTGTACGGAATACTATATTATTCAGAAATGGAATGATACAAGACAT
AGTCGGCTGAACAACTTATT
NNCCCTTTCTNTNNNNATGCATGGAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTATAATCAGCCCGTAGTGA
GGGCAGGCCTGTGTTCCTTGGAACAGAGCTGAGAATTTGTGAGAATAAGG
AAATGATTTTTTTCCATACACTTCCAATTATTACTTCCTACAGAGCTGGG
GAGCATTTTCTACTCAGTGCTCTTAGTTAAGGAGGCTCTGAGCTACAGTT
TATTGTTCTAGTCAGGTATAGACTTCTGTATATTAGGAAATACTATTTTA
AAATGAACAAACAAATAAATAAGGAAACAATAACAATGAAAGGAAAACCT
AAGGCAAGGAAACACTCAGCACTAAAGATTTCAGAACCTACAGGAACAAG
TATACTTTGCCACATCCTTGTTCATTATGTACTTAGAACTGTGCTGACGA
CCAAGTTTTCTTATACTGAAATCCCTATTATAAGCTCCTACATTTCAAGG
TGGTGGCATAAGGAAGTAATGCCTTAGGAAAGTCAGAAGATTATAAGGAC
TCTACCTATGTGGTATAGATTAGTGTCCTTATAATGAAATAACAAGAAAT
CAGCATCTATGAATCAAAAAGTATCACCACACAGGGAATCTGCTTGGATC
TTAACCTTAGTCTTTCCAACTCTAAGAAACATTTGTAATTTGTAAACCCC
GAAAATAGCTATACTATTTTAGTAGCTCACAAGGATTGAGATAAGAAGGA
CTGATTTATGTAGAANATTTCACTCCTAGTTTACCAGATGGTAAGAAATA
ATTTCTAAACTTTCTTTTCTCTTCATATACACACACACACACATACACAC
ACCCCGAATGCTTTTTCTGTTACACACACTTCTACTTATGCACATTCTTC
TTTGTGACAGATATACTAAATGAAAAGCTCTGATGACCCTGAAAGAAGGT
GAAAAATTAACCTTTTTAAGAAATATAAATACTTTCTTTTTTATTATTAA
AAAAAAATTTTTATACTCCCAATTTAATTCTCCACCTGGGCACCCTTGAA
ATATCAAATCCAAACCTCCTTCCCCGCCGCTCTCCCAGGGAATAAAAAAC
CCCCCCCCCCGGACTCTAAAACCTTGGGGCCCGTCCTTTGGGGTGGGATT
CCCCCGAGAAAAGAAATGAAATCCCTCTCGGGCCCCTACCTCTTTATACT
GGGTAAAACGGGCAACATATTAAATTGGTCCCAAGAACCCTTCCTATTTT
TTCTTTATAACGCACTCTTTTAGGGNAANTCTCCACTTTCATTCCTATTA
TTTACATACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_m19.g1 MSMg01no304_m19.g1 CHROMAT_FILE:
MSMg01no304_m19.g1 PHD_FILE: MSMg01no304_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:55 2005
         (703 letters)



>mm_chr1_150877864_150878966
          Length = 1103

 Score = 1330 bits (688), Expect = 0.0
 Identities = 699/703 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagcccgtagtgagggcaggcctgtgttccttggaacagagctgagaatttgtgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 atcagcccgtagtgagggcaggcctgtgttccttggaacagagctgagaatttgtgagaa 844

                                                                       
Query: 61  taaggaaatgatttttttccatacacttccaattattacttcctacagagctggggagca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 843 taaggaaatgatttttttccatacacttccaatcattacttcctacagagctggggagca 784

                                                                       
Query: 121 ttttctactcagtgctcttagttaaggaggctctgagctacagtttattgttctagtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttttctactcagtgctcttagttaaggaggctctgagctacagtttattgttctagtcag 724

                                                                       
Query: 181 gtatagacttctgtatattaggaaatactattttaaaatgaacaaacaaataaataagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gtatagacttctgtatattaggaaatactattttaaaatgaacaaacaaataaataagga 664

                                                                       
Query: 241 aacaataacaatgaaaggaaaacctaaggcaaggaaacactcagcactaaagatttcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aacaataacaatgaaaggaaaacctaaggcaaggaaacactcagcactaaagatttcaga 604

                                                                       
Query: 301 acctacaggaacaagtatactttgccacatccttgttcattatgtacttagaactgtgct 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acctagaggaacaagtatactttgccacatccttgttcattatgtacttagaactgtgct 544

                                                                       
Query: 361 gacgaccaagttttcttatactgaaatccctattataagctcctacatttcaaggtggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gacgaccaagttttcttatactgaaatccctattataagctcctacatttcaaggtggtg 484

                                                                       
Query: 421 gcataaggaagtaatgccttaggaaagtcagaagattataaggactctacctatgtggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcataaggaagtaatgccttaggaaagtcagaagattataaggactctacctatgtggta 424

                                                                       
Query: 481 tagattagtgtccttataatgaaataacaagaaatcagcatctatgaatcaaaaagtatc 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 423 tagattagtgtccttataatgaaataaaaagaaatcagcatctatgaatcaaaaagtatc 364

                                                                       
Query: 541 accacacagggaatctgcttggatcttaaccttagtctttccaactctaagaaacatttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 accacacagggaatctgcttggatcttaaccttagtctttccaactctaagaaacatttg 304

                                                                       
Query: 601 taatttgtaaaccccgaaaatagctatactattttagtagctcacaaggattgagataag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taatttgtaaaccccgaaaatagctatactattttagtagctcacaaggattgagataag 244

                                                      
Query: 661 aaggactgatttatgtagaanatttcactcctagtttaccaga 703
           |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 243 aaggactgatttatgtagaaaatttcactcctagtttaccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)