Query= MSMg01no305_b20.b1 MSMg01no305_b20.b1 CHROMAT_FILE:
MSMg01no305_b20.b1 PHD_FILE: MSMg01no305_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:38 2005
(414 letters)
>mm_chr1_23221328_23222145
Length = 818
Score = 725 bits (375), Expect = 0.0
Identities = 403/415 (97%), Gaps = 8/415 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctc-aagacagaag----aaacattaaaaaccctacaacttcaaaggaatcta 58
|||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 616 ggaattcctcaaagacagaagaaaaaaaaa--aaaaaccctacaacttcaaaggaatcta 559
Query: 59 atgaaagaact-ttaaagatgtctgatgtctagggtacaagagaagcagacccggggctt 117
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atgaaagaagtagtaaagatgtctgatgtctagggtacaagagaagcagacccggggctt 499
Query: 118 agtggagggggaaaaatgggcatgtatccaatgagccattcattgcacatcccatccggg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agtggagggggaaaaatgggcatgtatccaatgagccattcattgcacatcccatccggg 439
Query: 178 atttcagtcaaatcgaattctctccaaattgagctgctgggcacacgccagcattgtgag 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 438 atttcagtcaaatcgaattctctacaaattgagctgctgggcacacgccagcattgtgag 379
Query: 238 gtggcttgagaaagaaactgatgctgtaaaaggtgtcttccacatcttccctgccacctg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtggcttgagaaagaaactgatgctgtaaaaggtgtcttccacatcttccctgccacctg 319
Query: 298 ttttaaggactgtgaggatcactcctttcatcaaaaggtttgcaagaaatgtcaagagtt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttttaaggactgtgaggatcactcctttcatcaaaaggtttgcaagaaatgtcaagagtt 259
Query: 358 tgtccttccctttctccacagctgagcatacaaatggaggagaaaccctgccacc 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtccttccctttctccacagctgagcatacaaatggaggagaaaccctgccacc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 818
Length adjustment: 9
Effective length of query: 405
Effective length of database: 809
Effective search space: 327645
Effective search space used: 327645
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_b20.g1 MSMg01no305_b20.g1 CHROMAT_FILE:
MSMg01no305_b20.g1 PHD_FILE: MSMg01no305_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:39 2005
(764 letters)
>mm_chr1_23054484_23055647
Length = 1164
Score = 1371 bits (709), Expect = 0.0
Identities = 746/759 (98%), Gaps = 2/759 (0%)
Strand = Plus / Plus
Query: 8 atcttttcc-ataactgattgaacatgaaaaggccatagcgatagagacttgacattttt 66
||||||||| |||||||||||||||| |||||| | ||||||||| |||||||||||||
Sbjct: 206 atcttttccaataactgattgaacataaaaagggaaaagcgatagacacttgacattttt 265
Query: 67 tcccctaaaacatgcttggatgctgctggcgctttggaagattgtggaagatttagaagt 126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 266 tcccctaaaacatgcttggatgctgctggcgctttggaagattgtggaagttttagatgt 325
Query: 127 tggattctccctggagaatgtcagtcactgatagccaggctcatggtcttacacagtggc 186
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 326 tggattctccctggagaatgtcagtcactgatagccaggctcgtggtcttacacagtggc 385
Query: 187 ctgcttcctgtccactgctttctaactatggatgcattgtgactactcacccaaatt-cc 245
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 386 ctgcttcctgtccactgctttctaactatggatgcattgtgactcctcacccaaattccc 445
Query: 246 catgccacatcttccctcctgtgatggactgtgctctcttaaaacattgttccaaaacaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catgccacatcttccctcctgtgatggactgtgctctcttaaaacattgttccaaaacaa 505
Query: 306 tgctttcctttcttagattgcttttgctattaccaaaaagtgagaaaagtaaccaccata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgctttcctttcttagattgcttttgctattaccaaaaagtgagaaaagtaaccaccata 565
Query: 366 gtgtgctttttaaaatcaactgcatgttggaaccaaaaaggtttctatcaaatagtcaaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtgtgctttttaaaatcaactgcatgttggaaccaaaaaggtttctatcaaatagtcaaa 625
Query: 426 gagtgacatcatgcagagtatggatgatgctaccacctttatttgacaaaaaattggtgt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gagtgacatcatgcagagtatggatgatgctaccacctttatttgacaaaaaattggtgt 685
Query: 486 cctaattagtgcaataagattaacaagaagttaaaatcctataaattcgaatgaaagcaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cctaattagtgcaataagattaacaagaagttaaaatcctataaattcgaatgaaagcaa 745
Query: 546 tttccttatcattccacatagttttataagcatagaaaattcaaaagaattcacaaacta 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttccttatcattccacatagttttataagcatagaaaattcaaaagaattcacaaacta 805
Query: 606 ttataattaataagtgaattgagcagaaggctaaatacaaaatcatttttatctctgggt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttataattaataagtgaattgagcagaaggctaaatacaaaatcatttttatctctgggt 865
Query: 666 agcagagccatttagaanatgaaattaaacaaacaagataatgtgaacagagaatattan 725
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agcagagccatttagaaaatgaaattaaacaaacaagataatgtgaacagagaatattaa 925
Query: 726 ataattaaaaaggaagagataaaatagaatcttttaatt 764
|||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ataattaaaaaggaagagataaaatagaatcttttaatt 964
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1164
Length adjustment: 10
Effective length of query: 754
Effective length of database: 1154
Effective search space: 870116
Effective search space used: 870116
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
