Query= MSMg01no305_d10.b1 MSMg01no305_d10.b1 CHROMAT_FILE:
MSMg01no305_d10.b1 PHD_FILE: MSMg01no305_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:51 2005
(339 letters)
>mm_chr1_23123148_23123886
Length = 739
Score = 609 bits (315), Expect = e-179
Identities = 333/339 (98%)
Strand = Plus / Plus
Query: 1 taggggaacataagcccacactggaaattctgaacttgaccttaaatttccttgtttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggggaacataagcccacactggaaattctgaacttgaccttaaatttccttgtttctg 260
Query: 61 aaaagttcgtcctgtacttcattgatggtcaactatggcgcaatgatgtgtagattctga 120
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaaagttagtcctgtacgtcattgatggtcaactgtggcgcaatgatgtgtagattctga 320
Query: 121 acgctgtaagtttttatagctaagaacatgagcacctggattcaaaggtcatcaagtaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgctgtaagtttttatagctaagaacatgagcacctggattcaaaggtcatcaagtaac 380
Query: 181 actagataaatactttcagagagctatagatatgtacttttccagaaccacttatttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagataaatactttcagagagctatagatatgtacttttccagaaccacttatttatg 440
Query: 241 tccacagtagagaaagtagtgaagcatccacctgtccctcttctcctatacagagttgta 300
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 441 tccacagtagagaaagtagtgaagcatccacctgtccctcttctcccagacagagttgta 500
Query: 301 tacacttccgtaccaagataagacctatctccatttact 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacacttccgtaccaagataagacctatctccatttact 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_d10.g1 MSMg01no305_d10.g1 CHROMAT_FILE:
MSMg01no305_d10.g1 PHD_FILE: MSMg01no305_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:52 2005
(768 letters)
>mm_chr1_23272252_23273419
Length = 1168
Score = 1425 bits (737), Expect = 0.0
Identities = 761/769 (98%), Gaps = 2/769 (0%)
Strand = Plus / Minus
Query: 1 catcactttccacacccacatctttttaaatagcatcattcattacacaactgtttgaaa 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 968 catcactttccacacccacatctttttaaatagaagcattcattacacaactgtttgaaa 909
Query: 61 gtatcgttacagacatagcagctagaagctaacttataaagctttctgtagaagaacttg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gtatcgttacagacatagcagttagaagctaacttataaagctttctgtagaagaacttg 849
Query: 121 tctacagaactgtttggtaagaaatatggaatacaagcagggaacaaaaaaggtccatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tctacagaactgtttggtaagaaatatggaatacaagcagggaacaaaaaaggtccatag 789
Query: 181 caataaagcgtataaaaatcaggacaaaagtcttattcacaatccaacctttcaatcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 caataaagcgtataaaaatcaggacaaaagtcttattcacaatccaacctttcaatcagc 729
Query: 241 tttcacaactttataccatttcataagagaatggcaatttagctgaaaatagcttgctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttcacaactttataccatttcataagagaatggcaatttagctgaaaatagcttgctta 669
Query: 301 atctgaaaattaaacactttcaggagagttttatggcaagttaatatttgacttaaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atctgaaaattaaacactttcaggagagttttatggcaagttaatatttgacttaaagtg 609
Query: 361 ttttgagttatctaaagttcagtggctcaaataagatttta-ttttttagattttcatga 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 608 ttttgagttatctaaagttcagtggctcaaataagattttatttttttagattttcatga 549
Query: 420 aataactataaatctgcaagaaaaaaaaaacacaacaaaaacacttctattcaaataaca 479
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct: 548 aataactataaatctgcaag-aaaaaaagacacaacaaaaacacttttattcaaataaca 490
Query: 480 gttaaacagtcaataagcactcagtggatttgctgaatgtgaaatgaaccactaggaatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttaaacagtcaataagcactcagtggatttgctgaatgtgaaatgaaccactaggaatg 430
Query: 540 gctgacatttccaatgtgactggctcaaatttcacttgtaaagttaagcattacgagtga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctgacatttccaatgtgactggctcaaatttcacttgtaaagttaagcattacgagtga 370
Query: 600 agttaaaagacagctcaggccaggtgaacagcacaagcaccggaaaagcagcaataaaca 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 369 agttaaaagacagctcaggccaggtgaacagcacaagcacaggaaaagcagcaataaaca 310
Query: 660 agcggcagttgtgaagctcatgggtctgggatgagagagcaaggcagcttgggaacaact 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agcggcagttgtgaagctcatgggtctgggatgagagagcaaggcagcttgggaacaact 250
Query: 720 ctacaagcttctaggcccaggttccatgtctgtctaacatggaaaagtg 768
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctacaagcttctaggcccaggttccatgtctgtctaacatggaaaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1168
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1158
Effective search space: 877764
Effective search space used: 877764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
