BAC Information

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BAC

Clone NameMSMg01-305F08
Chromosome1 (Build37)
Map Location 85,101,716 - 85,102,130
singlet/doubletsinglet
Overlap geneA530032D15Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305F08.T7 (MSMg01no305_f08.b1)MSMg01-305F08.TJ (MSMg01no305_f08.g1)
ACCAG430338AG430339
length1,2991,274
length of high quality
(start - end)
424 (33 - 456)703 (86 - 788)
definitionCHROMAT_FILE: MSMg01no305_f08.b1 PHD_FILE: MSMg01no305_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:08 2005CHROMAT_FILE: MSMg01no305_f08.g1 PHD_FILE: MSMg01no305_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCAGTCAATCGCGCTATAGACTCCTATGGGAGAGGATCCGCGGAATT
CCACAGACAGTGCAAGGGCAGCAAAGATTAATGCAGCCATCCCTATGCCT
GTCATTTGATCACCACAACAAAAATGTCTTCAAAGACAGAAACTGCAAAC
ACTCAGAGACAGATACCTCCACCTACTTATATGACAGGCACTGAGCCAGT
GATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGCTGGTATCA
CTAGTGGACTTGCCCAAATGTCACAGGAGAAATGGTGCTTTCTTAGGACA
TCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGCATCACA
CACCTTCGTCTCATCTTTTCTATTTTTATTTTGAATTATGCATGTATGAG
TCTGTCTCAGTGTGCTTCCTACACACAAGTACAGTGTCCATGGAAGGCAG
AAAATTTTGTCTGACCCCCCCCCTGGCATGAGAGGCAGTTGGAAAAAAAA
GGATAGGTGCTGGGGACCCAACCCATGCCCACTACTAGGGCAATATGAGT
GCTTAAACCTGGGCCATCTCTCCTATCGTGTGTGTGTGTGTGTGTTTGTG
TGTGTGTGTGTGTGTGANANANANANANANNTNTNNNTNTNTTNTTATTT
TTTTTTTTTTTTTTTTATTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
NTTTTTTTNNTNTNTNTTTTTTTTAATTTTTTTTTATTAATATTTNAATA
TTATTTAATTTTTTTATTTAAATAAAAATTTTTTTTTTATTATAATTATT
AATATATTTATTTTATTTTATATATTTTTTTTTTTAATAATATNATATAT
TTATTTTTTTATTTTTTTATATTTAATATAATNTAATTTTTTTTAATTTT
TTTTTTTATTTTTATTATTATTATTTTTTATTATAATTATTTATTATATA
ATTTTTTTTTATATTTTTTTATATTTATATTTAATATATTTATTTTATTA
TTTATATTTTTATATTTATTTATTTATTATATATTATATTTTTTTTTTTA
TAATATTTTTTTTATTTATATTTTTTATAATATATTATTATATATTTTTA
TTATATATATATTATTTTTATATTTATATATTTAATTTTTTTANTTTATT
TTTTATATTATTTTATATATTTTATATTAAATATNAAATTTNTTAATTTA
TTTTTTAAAANAATAATATNTTTNTTTTTTTTTTTTAATAATTATTATTT
TATTAATTATTTATNNTNTTTTNAATTTTTTTAATATAAATACACATTG
NCCCACTATTNNNNACCATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAACTGTCCTGACTCCCAC
TCACTCTGGTTAGCCCCCTTGATTGCTTCATGAAACATACAGCTGTTGCT
GGGTTATGGCAGGAGCTGTCCAGATGTGCTATTTACTAACGATGGTAGCC
AGATATAGTCCTCTTATCTCCCCATTTTAGTACTAACTTGGTGAGCAGGG
AGAGGAGATGATAGGCAGAGCTGGGTGGATCAATTCGAATTTATCTGTAT
GTCTGCCCTGCTTCATTTCTCCCTGACAAGAGTGATTTGTGTCTGTAGCT
GATAGAAAAGCCCAGATAGCTCTAGAACAATCTGAAAACAATACAGGAGG
TGGAGAGATTCTACTCCACAGAAGTAGAGATGAAAACACCTCAAGGAAGA
GAAGATAAGTTTGCTCTCCCTGGCATCAGTGCAGAGACTTTGATGGTGTG
GGACTGGGAGGGAGCCTGCAGTGAACTGTCCATGGTGCTGAGACTAAGTT
TGTGATCAAGCCTGCAATGGACTGAAGGGGTTGATGTAGATGACCCTCTT
AAAGTTAGAAATGAGTCTGAGGTGAGAGACAAAGGACTTGTCCAAGTCCA
TTTTGGTCAAAAGAAGAGAAAACGTGGACTCGGGTCTTTGCCCAACACTC
TGGGTCACCTTCTTGTACCATCACTGCTGGGTGACACCCTGTGTGTGGCA
GAGATTGTATCCACTCTTGAGAGTCTGCAGGTCAAGGCAGCCAGTCTTGT
AGTGGCCCAGGGCTCTGGACCTTGTTTCACCTGCAGCATCAAAATTCTTG
TTACTCTCTCAGACACAGTGAGTAGATAGGAAGCATCTTGCGTAGTAATT
CCCCTGAATACACTGTTTTAAAACTAAAATCCTTGTTTCCCCTCTGTGGG
AGGGGGGAGCACCCCGCAAAAAAAAGGCTTCCCCCCACATGGTTTTCTAA
GGAAAATCCTCCCCCTGTTCTCGAAGCACTTGGAAACTCTAAAGGTTAAT
TTTTCTGCCCTACCTCTTCCTTTTTAACCCATGTTCTTCCTCCTGGAGAA
ATTTCATCTGATTTTCTCTCAAATCACTCGGTTTGGTGGTGGATTTATCT
ATATTCTTGCAACCAATTTAAATATTCCCCCCATCCCTGGGGTTTTTTTG
CCTGAACGTGCCGTATACTATATACTTTTCACTTTTCTGCTTATCACCTA
CTCGTCCTCAACTTTCGCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_f08.b1 MSMg01no305_f08.b1 CHROMAT_FILE:
MSMg01no305_f08.b1 PHD_FILE: MSMg01no305_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:08 2005
         (424 letters)



>mm_chr1_85101503_85102327
          Length = 825

 Score =  671 bits (347), Expect = 0.0
 Identities = 396/415 (95%), Gaps = 6/415 (1%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattccacagacagtgcaagggcagcaaagattaatgcagccatccctatgcctgtca- 72
           ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| 
Sbjct: 214 gaattccacagacagtgcaagggtagcaaagatcaatgcagccatccctacgcctgtcag 273

                                                                       
Query: 73  tttgatcaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagat 132
            ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 274 attgataaccacaacaaaaatgtcttcaaagacagaaactgcaaatactcagagacagat 333

                                                                       
Query: 133 acctccacctacttatatgacaggcactgagccagtgattaaccaccctatttattccca 192
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acctccacctgcttatatgaaaggcactgagccagtgattaaccaccctatttattccca 393

                                                                       
Query: 193 aaagacacagcacactgctggtatcactagtggacttgcccaaatgtcacaggagaaatg 252
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 394 aaagacacagcacactgctggtatcactagtggacttgatcaaatgtcacaggagaaatg 453

                                                                       
Query: 253 gtgctttcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgggggc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtgctttcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgggggc 513

                                                                       
Query: 313 atcacacaccttcgtctcatcttttctatttttattttgaattatgcatgtatgagtctg 372
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atcacacaccttcatctcatcttttctatttttattttgaattatgcatgtatgagtctg 573

                                                                  
Query: 373 tctcagtgtgcttcctacacacaagtacagtgtc-----catggaaggcagaaaa 422
           |||||||||||||||| ||| |||||||||||||     ||||||||||||||||
Sbjct: 574 tctcagtgtgcttcctgcacgcaagtacagtgtcgtgtccatggaaggcagaaaa 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 825
Length adjustment: 9
Effective length of query: 415
Effective length of database: 816
Effective search space:   338640
Effective search space used:   338640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)