BAC Information

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BAC

Clone NameMSMg01-305F10
Chromosome1 (Build37)
Map Location 131,129,155 - 131,129,566
singlet/doubletsinglet
Overlap geneLOC100042732
Upstream geneR3hdm1, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneThsd7b, LOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305F10.T7 (MSMg01no305_f10.b1)MSMg01-305F10.TJ (MSMg01no305_f10.g1)
ACCAG430342AG430343
length1,3531,290
length of high quality
(start - end)
355 (512 - 866)742 (128 - 869)
definitionCHROMAT_FILE: MSMg01no305_f10.b1 PHD_FILE: MSMg01no305_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:09 2005CHROMAT_FILE: MSMg01no305_f10.g1 PHD_FILE: MSMg01no305_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAGCCNNNNNNNNCGTCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCATTCAATAAGCCACTACTCTTAAGGCCAAGTCAAGAC
ATGGGTTTCTCCCAGACAGGCCTGTAAAAGCAGGGGATTAAAATGTGAAA
GAGGGAGGGACATACAAAAACTACTGAAAGTGAATATTCTCTGCCCGAAC
TGACTATGGGCAGGTAGCTCATGCCAATTGTTACTGGCTTTAACTGTTTT
CTAGAATAATTGCAGATTCCTATGAAAAATGTCAATAATTCAGAAAATTC
TCCTGTGGTGTGTCTGTGTGTGTGCATGTGTGTTCCTGGGTGTACATGAG
TATGCATGTGGCAGTGTGAAGACAATCTTGGGTGTCAAGTCCTTGGGTAA
CATCCAGAGATTTTTTTGTAGTGTCTCTAATTGAATTGAAACTTAACAAG
TAGGCTTGGCTGGCTTTTTTTTGCCCCCCCCCNAGNCACTTGTCTCTGCC
TTAAAAAAGATGGGATTATAAGTCCTTGCCACCATGGCCCCCATTTCTGG
TGGTGGAGCTCATACCCTCATACTTACAAGGTGTTCGACTTTCCTTTCTA
TTGCTGTGGTGAAACATCCTAGTCAGTAGCAGTAAGGGAAGAAAGTGATT
TTATAGGTCTCAATCATTATTGAGGAAAGTCAGAGAAAGAACTCAAGGCA
ATAACCTGAAGGCAGGAATCTTTGGAGGTGCTGCTTGGAGGCCCAGTCAG
GCTTAGACTTTGGCTCAACCAGATTCCTTATACAGCTCATGACCACCTTC
CCAAGGAATAGTGATGCCTACAGAGGTCCTGGTATTCCTACATCAATTAA
CAATGTCTCACAATTAACAGTCTCTCTCAGACATGCCTAGAGGCCAACTT
GAATAATACAGTGCTCAACTGAGACTGCATTTTCAGGAGAATTTTTAATG
CTATGTAAAGTGCAGAGTAATGGTAAATAGGGTAAAAGACAATTATTTGA
TGAGGGAAAATCTCTTTCTCCTGTGAAATAATTCTTTATTTAAAAGATGG
CTGGTATATCCGTTGAAGGCCAATAAAAAAATTCTGGCAAAAATTTCCCT
GGTAAACTCGGAAAGGTTTTTTGTTTGGGAGGGAGGGTCCTCACAATTTA
TTTTAAAGTAAACCCCCTTCTTTGCTCCGGCTAAAATAATATATCTTCCC
TAAAAAAACCATAAATGTGTGAGTGTTCCCTACACAAGGGGTAAAAAAAT
TTCTTTTCTTTATTTTATTCATGATTAATCCCTCTGATTAAATTATCTAT
AACATTAGAACACAAATTAATTCATTTAAATATAATGCGTCTATAAACAA
AAT
NCCAGTTCTTNNNNNCACGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAGAGAGTAATCTTGAA
TAGTTGAGAAACACTAAAGCCATTTCACAAGCATTTTTTAAAAATTTAAA
AACTAGTATCTACAATTTGTATTAAGTTTTACAGGTTGACATTCCTAACA
AGTAAGTATGCTGATAACACAGCTTCCCTTGTTTTGTGTGCTAAAAATAT
CCATCATTTTATTATTTCTACAGCTGAATTACTAATTGCCATTTTTGTGT
TATAACTAGAAAAACACATTATTAAAATTTTCTTTCCTTTTTCCATTTTT
CAAGTTGAAATATAATTATATCATTTCCCTCCTTCTACTTCTGATCTTTT
CTATGTTTCCTCCTTTTCAAATTCATAGCCTCTTTTCAAAAATTAATTGT
TATATGTAGATATAGGCATAGATCTACACACAGATGCAGCCTGTTGAGTC
CATTTAGATTTGTTTGTATGGATATGGTTTCAGGGCTTACTGCTTGGTAT
TAGTTAACCAATTGTTGGATTATCCCAGGGAAGACCATTCTCCCACTCTC
CTACTCTCTGCATTTTTTGGTTGCCTGTAGTTTTTTTGTGTAGGGGTTAG
GACTTCATGATCTTTCCCCATTCCATGTTACTACAGTTACTGATGTTGTT
CTTGTTCAGGTCCTGTTTAGTAACCCTAGTGTTGAGATATCATGGGTGCA
GCTTCCCTGACATTTCTAGAAGACAAAATTTCCCAGCAGATTTCCTAGTC
TTCTGTCCCTTATAATCTATCTACATCTGTGATGTTCCCCAAACCTTACC
TATACCAGTTGTGTTACAGATGTATCCTTTGGGGCTGGGGACTTCACAAC
CAATTATTCTGTGCATTTTGACTAGTTGTGGTTCTTTGTAATGCTCTCTA
TCTATTGGCAAAAAAAGAATCTTTTTATAAAAGTGACCAAAGTGTGGGTT
ATAAAGAAAAAATTTATCAACTCACTTTAGAAATTATGCCCCCCTTAAAA
AAAGAGGGGGAAAAGAACTTCTCTTTTTAATAAAGAAGTCCTTAACTCTG
TAAAATGGGGCTAGTTCTCCAATAAACGAAAAAATTATTTTTTTTTTTGA
ATGGCTTGTGTTCTTCATTAATAAAAATCACTTGGTTTTCGTGCTAAGTA
AATAAATTAATAACCCTCTTCGCGAATGTGTTATAACAACTTTTTGTTCC
TCCTTCGGGTACATATAATGAAAAATCGACTTACTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_f10.g1 MSMg01no305_f10.g1 CHROMAT_FILE:
MSMg01no305_f10.g1 PHD_FILE: MSMg01no305_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:09 2005
         (742 letters)



>mm_chr1_131129155_131130296
          Length = 1142

 Score =  729 bits (377), Expect = 0.0
 Identities = 404/413 (97%), Gaps = 2/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   cattttttaaaaatttaaaaactagtatctacaatttgtattaagttttacaggttgaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cattttttaaaaatttaaaaactagtatctacaatttgtattaagttttacaggttgaca 353

                                                                       
Query: 65  ttcctaacaagtaagtatgctgataacacagcttcccttgttttgtgtgctaaaaatatc 124
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 352 ttcataacaagtaagtatgctgatagcacagcttcccttgttttgtgtgctaaaaatatc 293

                                                                       
Query: 125 catcattttattatttctacagctgaattactaattgccatttttgtgttataactagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 catcattttattatttctacagctgaattactaattgccatttttgtgttataactagaa 233

                                                                       
Query: 185 aaacacattattaaaattttctttcctttttccatttttcaagttgaaatataattatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aaacacattattaaaattttctttcctttttccatttttcaagttgaaatataattatat 173

                                                                       
Query: 245 catttccctccttctacttctgatcttttctatgtttcctccttttcaaattcatagcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 catttccctccttctacttctgatcttttctatgtttcctccttttcaaattcatagcct 113

                                                                       
Query: 305 cttttcaaaaattaattgttatatgtagatataggcatagatctacacacagatgcagcc 364
           |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 112 ctttccaaaaattaattgttatatgtagatataggcatagatctagatacagatgcaacc 53

                                                                
Query: 365 tgttgagtccattta-gatttgtttgtatggatatggtttcagggcttactgc 416
           ||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 52  tgttgagtccatttatg-tttgtctgtatggatatggtttcagggcttactgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)