Query= MSMg01no305_k14.b1 MSMg01no305_k14.b1 CHROMAT_FILE:
MSMg01no305_k14.b1 PHD_FILE: MSMg01no305_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:52 2005
(420 letters)
>mm_chr1_76489193_76490013
Length = 821
Score = 756 bits (391), Expect = 0.0
Identities = 403/407 (99%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 15 gaatt-cagaaactgatttataaatacagaatacataaacatgaagtttagacttcagag 73
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattccagaaactgatttataaatacagaatacataaacatgaagtttagacttcagag 562
Query: 74 gttctaagtctcctagtgaattattttaacctttctacctctaagaaatagtatatggag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttctaagtctcctagtgaattattttaacctttctacctctaagaaatagtatatggag 502
Query: 134 gtagttggtgttaaaaaatcatttatctatatgctggcttattttgaaattttttacatt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagttggtgttaaaaaatcatttatctatatgctggcttattttgaaattttttacatt 442
Query: 194 gtaattataaaatagttactagcttatgcagccaacttcaaatatttagtcataaataaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaattataaaatagttactagcttatgcagccaacttcaaatatttagtcataaataaa 382
Query: 254 ctgaattgtatgactagtatcattgatgtataagggaatttgaaaacaaaacaagattaa 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaattgtatgactagtatcattgatgtataagggaatttgaaaacaaaacaagattaa 322
Query: 314 caaaccaaaatctctaaaaataattttatatactctcttaagatctttattatttttttt 373
||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct: 321 caaaccaaaatctctaaaaataattttatatactctcttaagacctttattattgttgtt 262
Query: 374 atcatagtcattgtcatcatcatgtcacctgtataattagtctcagt 420
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatagtcattgtcatcatcatgtcacctgtataattagtctcagt 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space: 333732
Effective search space used: 333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_k14.g1 MSMg01no305_k14.g1 CHROMAT_FILE:
MSMg01no305_k14.g1 PHD_FILE: MSMg01no305_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:52 2005
(385 letters)
>mm_chr1_76364492_76365276
Length = 785
Score = 687 bits (355), Expect = 0.0
Identities = 375/387 (96%), Gaps = 10/387 (2%)
Strand = Plus / Plus
Query: 1 agaagcatggatgacagacagcgcgtcttaggggctggactgatttggattctccattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagcatggatgacagacagcgcgtcttaggggctggactgatttggattctccattca 260
Query: 61 gagcacaacccaagacccatgaaatactcctgctgggagagaagcagaaagctgtagtct 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcacaacccaagacccatgaaacactcctgctgggagagaagcagaaagctgtagtct 320
Query: 121 tgaatactttttcttaaaatgtgaagttaatggggcggcttgactaatataatgcactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatactttttcttaaaatgtgaagttaatggggcggcttgactaatataatgcactca 380
Query: 181 acttgatctacagcttgctgtttgtgttgttagagtgaattttaaagtagatacagtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgatctacagcttgctgtttgtgttgttagagtgaattttaaagtagatacagtaaa 440
Query: 241 caacaaaggaatataccaagatcattctaggaaaggcaattctccttttgtaacctgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacaaaggaatataccaagatcattctaggaaaggcaattctccttttgtaacctgaat 500
Query: 301 aatttttcattttgttatagaattcagat-----ttttttataaggatccattgttggat 355
||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 501 aatttttcattttgttatagaattcagataccagt-----agaaggatccattgttggat 555
Query: 356 ggtagggctgtatgaatagatgatttt 382
|||||||||||||||||||||||||||
Sbjct: 556 ggtagggctgtatgaatagatgatttt 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
