BAC Information

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BAC

Clone NameMSMg01-306E05
Chromosome1 (Build37)
Map Location 93,822,315 - 93,822,863
singlet/doubletsinglet
Overlap genenone
Upstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306E05.T7 (MSMg01no306_e05.b1)MSMg01-306E05.TJ (MSMg01no306_e05.g1)
ACCAG430978AG430979
length755845
length of high quality
(start - end)		549 (71 - 619)195 (79 - 273)
definitionCHROMAT_FILE: MSMg01no306_e05.b1 PHD_FILE: MSMg01no306_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:59 2005CHROMAT_FILE: MSMg01no306_e05.g1 PHD_FILE: MSMg01no306_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCATGGTTCTCAGATGCGGTATGAGAGAGGAGTGAGTGTCCCAT
GAGGCTTGACAGTTCTGGCTTGGACACACTGGGCTACACTGCCCACCCAG
TCTCTAGCCACAGATGGTAGCATGTACTTGGACACAGGAGTCTAGAAACG
GGCAGAACTTGACTAGGAATGCACATCGATGTGACACAGACTAGCCATCC
ATCATAGGCATAAAGCTGCGTGGCAGGGTAGAGCAGGGACTAGCAAGTTG
AGTGGAGGTACTGTATCCACAGAGGACCCAGCTGAGGAGATGCACGAGGG
GACTGCTCAGGAAGTAAGGAAATCACAACTTGTGGGACACTAGGGCAGGA
ACACCAGAAAGGCAACAGTGCACAGCTGGGACACAGGTTAGGAGTGGAGA
AGTCTCTCATAAGGCCAGGACAGTGAGCCTGCAGCACATACCCTGAACGT
GGCCTCCATCCTTACCCAACCTGACACCAGGATGCCAACACCATCATAAG
CACAGCTCTGGGAACCAGTCCCAGCCCAGAGCTAAGCAGGTTCTCACTTG
CCAGAAACACAGCCCTGAAATTTCAAGTGATGACCAGATAATGCACCAAG
CTCCAGCTATGTCACTGACCTGATGGGACTTCCAGAAGAAGCAGATGTTA
TTCTTCCTATAGGAAGGATAAGATGTTCCCCCAAACCAAGGACAAGCCCC
CCAGG

TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAAAAAACGGT
GAACTATAGAAGGATTCCCGAAAAAACTCCGGATAATGTCAGTTAGAAAA
CAATGTTGGGTTGGGCAGTGGTGGCCCCCATCTTTAATCCCAGCACATGG
GAGGCAGAGGCAGGGGAATCTCTGGGCTCGAGGCCAGCCTGGACTATAGA
GTGAGTTCCAAGACTGACAGGCTGTACAGAGAAACCCTGTCTTGAAGAAA
AGAAAATGAGGAGAGGAGAGGAGAGGTCTTTTCTTTCTTCTCCTTTTCCT
TTTTGTCCTCTCTCCCCATTCCTTTTTTTTTTTTTTCCCCCCCTCCCCCC
CCAGACAACCAAAAATTCTTAGGTAGCCTTCCCGAAACAGAACCCCCAAT
TTNGGTTTTTTATTTATTTGTGGGTTTTGGGCGCCCAAAAAAGTTTACTC
TAAAAACTTCTTGGGGGGGGGGGGTTTCCCTTCCTCCCTATCTCTACTAT
TCAACGTCTATCCTATCATCATTTCTTCCCTATTTTATTCCACTATAATC
ACCACCTTTTCTTATTACCACGCCTTGCTTGTTCTTTTCATCTCTTACCC
CCTCTTTCTTATCCTTCTCTCCTCTTTCTACCTTCCACTCTGTTCTTATA
TAACTTTTATTATACTTATACTTCCCTTCTCTCTATTACTTCTCTTGTGT
CCCACATTTTATTTCTCCGCTTCATTACCTCATTCTTTCTCGTTATCTCT
TTCTATTCTCCATCTCGCCCTTCTATGTTCCCCTTCTCGGCGTATTTTAC
ACTCACAGTCTCCACCCTATTCACTCCCTCTTATTTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_e05.b1 MSMg01no306_e05.b1 CHROMAT_FILE:
MSMg01no306_e05.b1 PHD_FILE: MSMg01no306_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:59 2005
         (549 letters)



>mm_chr1_93822115_93823063
          Length = 949

 Score = 1062 bits (549), Expect = 0.0
 Identities = 549/549 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcggtatgagagaggagtgagtgtcccatgaggcttgacagttctggcttggacacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgcggtatgagagaggagtgagtgtcccatgaggcttgacagttctggcttggacacact 690

                                                                       
Query: 61  gggctacactgcccacccagtctctagccacagatggtagcatgtacttggacacaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gggctacactgcccacccagtctctagccacagatggtagcatgtacttggacacaggag 630

                                                                       
Query: 121 tctagaaacgggcagaacttgactaggaatgcacatcgatgtgacacagactagccatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tctagaaacgggcagaacttgactaggaatgcacatcgatgtgacacagactagccatcc 570

                                                                       
Query: 181 atcataggcataaagctgcgtggcagggtagagcagggactagcaagttgagtggaggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atcataggcataaagctgcgtggcagggtagagcagggactagcaagttgagtggaggta 510

                                                                       
Query: 241 ctgtatccacagaggacccagctgaggagatgcacgaggggactgctcaggaagtaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctgtatccacagaggacccagctgaggagatgcacgaggggactgctcaggaagtaagga 450

                                                                       
Query: 301 aatcacaacttgtgggacactagggcaggaacaccagaaaggcaacagtgcacagctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatcacaacttgtgggacactagggcaggaacaccagaaaggcaacagtgcacagctggg 390

                                                                       
Query: 361 acacaggttaggagtggagaagtctctcataaggccaggacagtgagcctgcagcacata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acacaggttaggagtggagaagtctctcataaggccaggacagtgagcctgcagcacata 330

                                                                       
Query: 421 ccctgaacgtggcctccatccttacccaacctgacaccaggatgccaacaccatcataag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccctgaacgtggcctccatccttacccaacctgacaccaggatgccaacaccatcataag 270

                                                                       
Query: 481 cacagctctgggaaccagtcccagcccagagctaagcaggttctcacttgccagaaacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cacagctctgggaaccagtcccagcccagagctaagcaggttctcacttgccagaaacac 210

                    
Query: 541 agccctgaa 549
           |||||||||
Sbjct: 209 agccctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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