BAC Information

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BAC

Clone NameMSMg01-306G16
Chromosome1 (Build37)
Map Location 142,355,332 - 142,355,615
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneAspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306G16.T7 (MSMg01no306_g16.b1)MSMg01-306G16.TJ (MSMg01no306_g16.g1)
ACCAG431086
length758761
length of high quality
(start - end)
---284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no306_g16.b1 PHD_FILE: MSMg01no306_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:11 2005CHROMAT_FILE: MSMg01no306_g16.g1 PHD_FILE: MSMg01no306_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAGAGTTGGACATTAAGCAAACAGG
AAATGAAATATTATGAGATATTTGCCTTATGTACTATTTATTTTGTTAAT
CAATTGGTTTAGACCCTTCAAATTGTGAACTATGGATTATCATTTACTAA
GGAATAGAAAAATTACTGAAGTGAATGAGAGGATAAAAGTCTGAAAAAAA
AAAGACATACAGTTTAAACTTGATAAAAGTGTACCTGTAGGAAATAACGA
TATTCAGTGGAAAGTATAATTTGATTCTCCAAGGAGCAATTATTTAGGAA
GCTATTATTTCTTTTTGGCCCCCCCACCCCCAGAAATTGAATTGAGGTGG
TGATAATAGAAAAAGAGAGTGAAAACAAATTCATAAAGCATTTCGTTTAT
TTCTTCATCGATTGTGAAAACCCAAAACAGTAAGGAAGCTTTGTTTTCTC
TTTGCAACTCTCATTTTTTATATCCTCCCAATTGATGAGGTTTCTAACAG
ATCCCTTGGCTTCTTGATTAATAGCTGCTTTGGTGTCTGCACCAAAAGCA
TTCTGAGTCTCTGACATGCTTCATCTCTTCGCAGATAGTGCTGAAACAAC
CAGCAATGTTGTTTCAGTGCTATACAGAATACACAGAAGACACCAGATAA
CTCAAAGATCTAGTAGGAATATTTATTGCTAATACGATATAATTTCATAT
TATATTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_g16.g1 MSMg01no306_g16.g1 CHROMAT_FILE:
MSMg01no306_g16.g1 PHD_FILE: MSMg01no306_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:12 2005
         (284 letters)



>mm_chr1_142355132_142355815
          Length = 684

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagagttggacattaagcaaacaggaaatgaaatattatgagatatttgccttatgta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagagttggacattaaacaaacaggaaatgaaatattatgagatatttgccttatgta 260

                                                                       
Query: 61  ctatttattttgttaatcaattggtttagacccttcaaattgtgaactatggattatcat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctatttattttgttaatcaattggtttagacccttcaaattatgaactatggattatcat 320

                                                                       
Query: 121 ttactaaggaatagaaaaattactgaagtgaatgagaggataaaagtctgaaaaaaaaaa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactaaggaatagaaaaatttctgaagtgaatgagaggataaaagtctgaaaaaaaaaa 380

                                                                       
Query: 181 gacatacagtttaaacttgataaaagtgtacctgtaggaaataacgatattcagtggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatacagtttaaacttgataaaagtgtacctgtaggaaataacgatattcagtggaaa 440

                                                       
Query: 241 gtataatttgattctccaaggagcaattatttaggaagctatta 284
           ||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 441 gtataaaaagattctccaaggagcaattatttaggaagctatta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)