BAC Information

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BAC

Clone NameMSMg01-306P19
Chromosome1 (Build37)
Map Location 155,212,523 - 155,212,779
singlet/doubletsinglet
Overlap geneEG626058
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795
Downstream gene1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306P19.T7 (MSMg01no306_p19.b1)MSMg01-306P19.TJ (MSMg01no306_p19.g1)
ACCAG431487AG431488
length742732
length of high quality
(start - end)
257 (72 - 328)586 (76 - 661)
definitionCHROMAT_FILE: MSMg01no306_p19.b1 PHD_FILE: MSMg01no306_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:55 2005CHROMAT_FILE: MSMg01no306_p19.g1 PHD_FILE: MSMg01no306_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGC
GGAATTCAGATCATCTTTCCAGCACACAAGCTCCTCTCTATCATACTGGT
CCCAAGAAGTTTGTGCCACCATACCTCACTTAAAAAAAGAAAAAAAAACT
TAGTTATGAAAAAAAATTGTCTGATTGAAAACACCAATGAACCTGGGCGG
TGGTAACGCACTGCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCAGA
TTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC
AGGGCTACACAGAAAAATCCTGTTTGGAAAAACCTATNAAAAAAAAAAAA
AAAAAAAAAAAGAAGAAGATTTTATTTAAACACCCCACCACCCGAGATAA
AAAAGACCTTTGACAATGACCAAGGGAAGAATGAATAGAAATCATTAAGC
ATCATTAGAAGTAGGAAAGAGTTGGTCCCTCTGGCCGTTGTCCATCATGA
GTGTTGGGCTCCACAATAGGCCATTACCCATATTCACTCAGGAAGTGTTT
CCTGTTTCAATGTCCTGTAGTCTTTGTCTGCTCTTGCCCGTGAGCAAGTG
ACACCATCAGCAGGATTGATTTATTACTTTATTATTATTATTATTAATGT
GNGTGTTTTGTGTGTTTCTGATATTCTGAACCTTTTCTTCCATGTGTCTT
TTGAGATTAATTGACAGGATCCAGTGCTACTCTGAAAATCTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCAAAGCAGAAGGAGAAAGAAGTA
GGAAAGTCAGACATAATAGAATAATCAGGCACACCAAGGCCAACTGAAAA
GCAGTCATGCACAAATGAAATCTATACAGCCATTGTCCAGGGTTAAGATT
GGGAGAAATGGAAACAACTATTTTTAACAAAGAGCTGCCTTGGGCTACTG
AGATGTCTCCATTCCAGCCTACTGCAGGCAGTCCCTGTCATAGTATGCTG
TCGCCAGCAAGTTCCTGCCTCCAGGTGCCTGCCTTGAGTTTCTACTTTGG
CTTCCCCCAATGGGATGTGAGCTGAGATATGTAAGCCAAAGAAAGCCTTT
CGTCCCCAAGTCGCTTTTGGTCATAGTATTTTATCCCAGCAATGGAACCC
CTCACTAAGGCAGCACATAGCTGGGCATGATGGTGCATGCTTTTAGTCCC
AGCACTAGGGAAGCAGCGGCAAGAGGATGTCTCAGTTCAAGGCTAGCTTG
GTCTAGCTAAAGAGTTCCAGGGCAGCCTGAACTACATAGAGACCCTGTGT
CCAAAAACAAAATAAACAAATAACAACAACAACAACAACAAAGACAACAC
ACAAAACAATGGATTCCATCATGACATTTTCATAGACTTGTTTGTTTGGT
TGTTTGTTTGGTTTGGTTTTGTTTTGGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_p19.b1 MSMg01no306_p19.b1 CHROMAT_FILE:
MSMg01no306_p19.b1 PHD_FILE: MSMg01no306_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:55 2005
         (257 letters)



>mm_chr1_155212323_155212979
          Length = 657

 Score =  497 bits (257), Expect = e-145
 Identities = 257/257 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacacaagctcctctctatcatactggtcccaagaagtttgtgccaccatacctcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacacaagctcctctctatcatactggtcccaagaagtttgtgccaccatacctcactt 260

                                                                       
Query: 61  aaaaaaagaaaaaaaaacttagttatgaaaaaaaattgtctgattgaaaacaccaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaagaaaaaaaaacttagttatgaaaaaaaattgtctgattgaaaacaccaatgaa 320

                                                                       
Query: 121 cctgggcggtggtaacgcactgctttgatcccagcacttgggaggcagaggcaggcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgggcggtggtaacgcactgctttgatcccagcacttgggaggcagaggcaggcagat 380

                                                                       
Query: 181 ttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacaca 440

                            
Query: 241 gaaaaatcctgtttgga 257
           |||||||||||||||||
Sbjct: 441 gaaaaatcctgtttgga 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)